Entry Database : PDB / ID : 4p8x Structure visualization Downloads & linksTitle The crystal structures of YKL-39 in the presence of chitooligosaccharides (GlcNAc6) were solved to resolutions of 2.48 angstrom ComponentsChitinase-3-like protein 2 Details Keywords SUGAR BINDING PROTEIN / Chitinase 3-like protein 2 / human YKL-39 / Family-18 chitinaseFunction / homology Function and homology informationFunction Domain/homology Component
chitin catabolic process / chitin binding / carbohydrate binding / carbohydrate metabolic process / hydrolase activity / extracellular space / extracellular region Similarity search - Function Chitinase A; domain 3 - #10 / Chitinase insertion domain superfamily / Chitinase II / Glyco_18 / Glycosyl hydrolases family 18 (GH18) domain profile. / Glycoside hydrolase family 18, catalytic domain / Glycosyl hydrolases family 18 / Chitinase A; domain 3 / Glycosidases / Glycoside hydrolase superfamily ... Chitinase A; domain 3 - #10 / Chitinase insertion domain superfamily / Chitinase II / Glyco_18 / Glycosyl hydrolases family 18 (GH18) domain profile. / Glycoside hydrolase family 18, catalytic domain / Glycosyl hydrolases family 18 / Chitinase A; domain 3 / Glycosidases / Glycoside hydrolase superfamily / TIM Barrel / Roll / Alpha-Beta Barrel / Alpha Beta Similarity search - Domain/homologyBiological species Homo sapiens (human)Method X-RAY DIFFRACTION / SYNCHROTRON / Resolution : 2.48 Å DetailsAuthors Suginta, W. / Ranok, A. / Robinson, R.C. / Wongsantichon, J. Funding support Thailand, 1items Details Hide detailsOrganization Grant number Country The Office of the Higher Education Commission CHE500307 Thailand
CitationJournal : J.Biol.Chem. / Year : 2015Title : Structural and Thermodynamic Insights into Chitooligosaccharide Binding to Human Cartilage Chitinase 3-like Protein 2 (CHI3L2 or YKL-39).Authors : Ranok, A. / Wongsantichon, J. / Robinson, R.C. / Suginta, W. History Deposition Apr 1, 2014 Deposition site : RCSB / Processing site : RCSBRevision 1.0 Dec 3, 2014 Provider : repository / Type : Initial releaseRevision 1.1 Dec 17, 2014 Group : Database referencesRevision 1.2 Feb 4, 2015 Group : Derived calculationsRevision 1.3 Feb 11, 2015 Group : Database referencesRevision 2.0 Jul 29, 2020 Group : Atomic model / Data collection ... Atomic model / Data collection / Database references / Derived calculations / Other / Refinement description / Source and taxonomy / Structure summary Category : atom_site / chem_comp ... atom_site / chem_comp / citation / entity / entity_src_gen / pdbx_branch_scheme / pdbx_chem_comp_identifier / pdbx_database_status / pdbx_entity_branch / pdbx_entity_branch_descriptor / pdbx_entity_branch_link / pdbx_entity_branch_list / pdbx_nonpoly_scheme / pdbx_struct_assembly / pdbx_struct_mod_residue / pdbx_struct_oper_list / refine_hist / struct_conn / struct_keywords / struct_site / struct_site_gen Item : _atom_site.auth_asym_id / _atom_site.auth_seq_id ... _atom_site.auth_asym_id / _atom_site.auth_seq_id / _chem_comp.name / _chem_comp.type / _citation.journal_id_CSD / _entity.pdbx_description / _entity.type / _entity_src_gen.pdbx_alt_source_flag / _pdbx_database_status.pdb_format_compatible / _pdbx_struct_assembly.oligomeric_details / _pdbx_struct_mod_residue.auth_asym_id / _pdbx_struct_mod_residue.auth_seq_id / _pdbx_struct_oper_list.symmetry_operation / _refine_hist.number_atoms_solvent / _refine_hist.pdbx_number_atoms_ligand / _refine_hist.pdbx_number_atoms_nucleic_acid / _refine_hist.pdbx_number_atoms_protein / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_seq_id / _struct_keywords.text Description : Carbohydrate remediation / Provider : repository / Type : RemediationRevision 2.1 Dec 27, 2023 Group : Data collection / Database references / Structure summaryCategory : chem_comp / chem_comp_atom ... chem_comp / chem_comp_atom / chem_comp_bond / database_2 Item : _chem_comp.pdbx_synonyms / _database_2.pdbx_DOI / _database_2.pdbx_database_accession
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