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Open data
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Basic information
Entry | Database: PDB / ID: 4or8 | ||||||
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Title | Crystal structure of Marburg virus VP24 | ||||||
![]() | Membrane-associated protein VP24 | ||||||
![]() | VIRAL PROTEIN / Marburg / VP24 / pyramidal fold / protein / Ebola / virus / viral | ||||||
Function / homology | Filovirus membrane-associated VP24 / Filovirus membrane-associated protein VP24 / host cell endomembrane system / viral process / viral nucleocapsid / structural constituent of virion / host cell plasma membrane / virion membrane / Membrane-associated protein VP24![]() | ||||||
Biological species | ![]() Kenya 1980 | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Zhang, A.P.P. / Bornholdt, Z. / Abelson, D. / Saphire, E.O. | ||||||
![]() | ![]() Title: Crystal Structure of Marburg Virus VP24. Authors: Zhang, A.P. / Bornholdt, Z.A. / Abelson, D.M. / Saphire, E.O. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 102.2 KB | Display | ![]() |
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PDB format | ![]() | 78.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 429.3 KB | Display | ![]() |
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Full document | ![]() | 431.2 KB | Display | |
Data in XML | ![]() | 17.4 KB | Display | |
Data in CIF | ![]() | 23.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 30387.223 Da / Num. of mol.: 2 / Fragment: VP24 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.99 Å3/Da / Density % sol: 38.07 % |
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Crystal grow | Temperature: 273 K / Method: liquid diffusion / pH: 6.5 Details: 0.1M ADA (Hampton Research), 0.1M lithium acetate, 20% glycerol, 2% (v/v) PEG 400 and 8% (v/v) PEG 4000 , pH 6.5, LIQUID DIFFUSION, temperature 273K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315 / Detector: CCD / Date: Oct 18, 2012 |
Radiation | Monochromator: double crystal, Si(111) / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.979 Å / Relative weight: 1 |
Reflection | Resolution: 2.654→40 Å / Num. all: 13515 / Num. obs: 13245 / % possible obs: 98 % / Observed criterion σ(F): 2 / Observed criterion σ(I): 4 / Redundancy: 2 % / Rmerge(I) obs: 0.06 / Net I/σ(I): 12.77 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.654→39.209 Å
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Refine LS restraints |
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LS refinement shell |
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