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Open data
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Basic information
| Entry | Database: PDB / ID: 4mj1 | ||||||
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| Title | unliganded BK Polyomavirus VP1 pentamer | ||||||
Components | VP1 capsid protein | ||||||
Keywords | VIRAL PROTEIN / antiparallel beta sandwich / jelly-roll topology / polyomavirus / receptor switch / virus major capsid protein / attachment to host-cell surface receptors | ||||||
| Function / homology | Function and homology informationcaveolin-mediated endocytosis of virus by host cell / T=7 icosahedral viral capsid / endocytosis involved in viral entry into host cell / virion attachment to host cell / host cell nucleus / structural molecule activity Similarity search - Function | ||||||
| Biological species | BK polyomavirus | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2 Å | ||||||
Authors | Neu, U. / Stroh, L.J. / Stehle, T. | ||||||
Citation | Journal: Plos Pathog. / Year: 2013Title: A Structure-Guided Mutation in the Major Capsid Protein Retargets BK Polyomavirus. Authors: Neu, U. / Allen, S.A. / Blaum, B.S. / Liu, Y. / Frank, M. / Palma, A.S. / Stroh, L.J. / Feizi, T. / Peters, T. / Atwood, W.J. / Stehle, T. | ||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 4mj1.cif.gz | 533.5 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb4mj1.ent.gz | 441.9 KB | Display | PDB format |
| PDBx/mmJSON format | 4mj1.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 4mj1_validation.pdf.gz | 470.8 KB | Display | wwPDB validaton report |
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| Full document | 4mj1_full_validation.pdf.gz | 475 KB | Display | |
| Data in XML | 4mj1_validation.xml.gz | 53.6 KB | Display | |
| Data in CIF | 4mj1_validation.cif.gz | 77 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/mj/4mj1 ftp://data.pdbj.org/pub/pdb/validation_reports/mj/4mj1 | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 4mj0C ![]() 3bwqS S: Starting model for refinement C: citing same article ( |
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| Similar structure data |
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Assembly
| Deposited unit | ![]()
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Ens-ID: 1 / Refine code: 4
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BK polyomavirus
X-RAY DIFFRACTION
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