[English] 日本語
Yorodumi
- PDB-4ji5: Crystal Structure of 30S ribosomal subunit from Thermus thermophilus -

+
Open data


ID or keywords:

Loading...

-
Basic information

Entry
Database: PDB / ID: 4ji5
TitleCrystal Structure of 30S ribosomal subunit from Thermus thermophilus
Components
  • (RIBOSOMAL PROTEIN ...) x 20
  • 16S rRNA
KeywordsRibosome/Antibiotic / 30S ribosomal subunit / Ribosome / Streptomycin / RNA structure / Thermus thermophilus / Antibiotic resistance / Decoding / Ribosome-Antibiotic complex
Function / homology
Function and homology information


small ribosomal subunit / tRNA binding / ribosome / rRNA binding / structural constituent of ribosome / translation / mRNA binding / zinc ion binding / metal ion binding
Similarity search - Function
Ribosomal protein S4/S9, N-terminal domain / Ribosomal Protein S4 Delta 41; Chain A, domain 1 / Ribosomal protein S16 / S16 Ribosomal Protein; Chain: A; / Ribosomal protein S18 / 30s Ribosomal Protein S18 / Ribosomal protein S13/S18, C-terminal domain / 30s ribosomal protein s13; domain 2 / Ribosomal protein S20 / 30s Ribosomal Protein S19; Chain A ...Ribosomal protein S4/S9, N-terminal domain / Ribosomal Protein S4 Delta 41; Chain A, domain 1 / Ribosomal protein S16 / S16 Ribosomal Protein; Chain: A; / Ribosomal protein S18 / 30s Ribosomal Protein S18 / Ribosomal protein S13/S18, C-terminal domain / 30s ribosomal protein s13; domain 2 / Ribosomal protein S20 / 30s Ribosomal Protein S19; Chain A / Ribosomal protein S19/S15 / Ribosomal protein S3, C-terminal domain / Ribosomal Protein S14/S29 / 30s Ribosomal Protein S14; Chain N / Ribosomal Protein S8; Chain: A, domain 1 - #30 / RNA-binding S4 domain / Ribosomal protein S6/Translation elongation factor EF1B / Ribosomal protein S7/S5 / Ribosomal Protein S7 / Ribosomal protein S3 C-terminal domain / Helix hairpin bin / Ribosomal protein S11/S14 / Dna Ligase; domain 1 - #10 / Ribosomal protein S10 / Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A / S15/NS1, RNA-binding / K homology (KH) domain / Double Stranded RNA Binding Domain - #20 / Helicase, Ruva Protein; domain 3 - #50 / Glucose-6-phosphate isomerase like protein; domain 1 / Ribosomal Protein S8; Chain: A, domain 1 / Ribosomal Protein S5; domain 2 - #10 / 30S ribosomal protein Thx / 30S ribosomal protein Thx / 30S ribosomal protein / GMP Synthetase; Chain A, domain 3 / Ribosomal protein S14, type Z / Ribosomal Protein S5; domain 2 / Double Stranded RNA Binding Domain / Helicase, Ruva Protein; domain 3 / Ribosomal protein S14/S29 / Nucleic acid-binding proteins / Dna Ligase; domain 1 / Ribosomal protein S6, conserved site / Ribosomal protein S6 signature. / Ribosomal protein S3, bacterial-type / Ribosomal protein S19, bacterial-type / Ribosomal protein S20 / Ribosomal protein S20 / Ribosomal protein S20 superfamily / Ribosomal protein S7, bacterial/organellar-type / Ribosomal protein S11, bacterial-type / Ribosomal protein S9, bacterial/plastid / Ribosomal protein S5, bacterial-type / 30S ribosomal protein S17 / Ribosomal protein S13, bacterial-type / Ribosomal protein S6, plastid/chloroplast / Ribosomal protein S4, bacterial-type / Ribosomal protein S2, bacteria/mitochondria/plastid / Ribosomal protein S18, conserved site / Ribosomal protein S18 signature. / Methane Monooxygenase Hydroxylase; Chain G, domain 1 / Ribosomal protein S16 / Ribosomal protein S16 / Ribosomal protein S16 domain superfamily / Ribosomal protein S15, bacterial-type / Ribosomal protein S6 / Ribosomal protein S6 / Ribosomal protein S6 superfamily / Ribosomal protein S12, bacterial-type / Translation elongation factor EF1B/ribosomal protein S6 / Ribosomal protein S18 / Ribosomal protein S18 / Ribosomal protein S18 superfamily / K Homology domain / K homology RNA-binding domain / S4 RNA-binding domain profile. / Ribosomal protein S4/S9 N-terminal domain / Ribosomal protein S3 signature. / Ribosomal protein S3, conserved site / Ribosomal protein S10, conserved site / Ribosomal protein S10 signature. / Ribosomal protein S14 signature. / Ribosomal protein S14, conserved site / Ribosomal protein S2 signature 1. / KH domain / Ribosomal protein S2, conserved site / Ribosomal protein S2 / Ribosomal protein S2 / Ribosomal protein S2, flavodoxin-like domain superfamily / Ribosomal protein S3, C-terminal domain / Type-2 KH domain profile. / Ribosomal protein S3, C-terminal / Ribosomal protein S3, C-terminal domain superfamily / K Homology domain, type 2 / Ribosomal protein S5, N-terminal, conserved site / Ribosomal protein S5 signature. / Ribosomal protein S19 signature. / Ribosomal protein S15/S19, conserved site / Ribosomal protein S19
Similarity search - Domain/homology
RNA (> 1000) / 30S ribosomal protein S13 / 30S ribosomal protein S6 / 30S ribosomal protein S16 / 30S ribosomal protein S15 / 30S ribosomal protein Thx / 30S ribosomal protein S5 / 30S ribosomal protein S8 / 30S ribosomal protein S14 type Z / 30S ribosomal protein S17 ...RNA (> 1000) / 30S ribosomal protein S13 / 30S ribosomal protein S6 / 30S ribosomal protein S16 / 30S ribosomal protein S15 / 30S ribosomal protein Thx / 30S ribosomal protein S5 / 30S ribosomal protein S8 / 30S ribosomal protein S14 type Z / 30S ribosomal protein S17 / 30S ribosomal protein S19 / 30S ribosomal protein S10 / 30S ribosomal protein S12 / 30S ribosomal protein S20 / 30S ribosomal protein S11 / RNA (> 100) / 30S ribosomal protein S9 / 30S ribosomal protein S4 / 30S ribosomal protein S3 / 30S ribosomal protein S2 / 30S ribosomal protein S7 / 30S ribosomal protein S8 / 30S ribosomal protein S17 / 30S ribosomal protein S14 type Z / 30S ribosomal protein S12 / : / RNA / RNA (> 10) / 30S ribosomal protein S18
Similarity search - Component
Biological speciesThermus thermophilus (bacteria)
MethodX-RAY DIFFRACTION / SYNCHROTRON / FOURIER SYNTHESIS / Resolution: 3.85 Å
AuthorsDemirci, H. / Wang, L. / Murphy IV, F. / Murphy, E. / Carr, J. / Blanchard, S. / Jogl, G. / Dahlberg, A.E. / Gregory, S.T.
CitationJournal: Rna / Year: 2013
Title: The central role of protein S12 in organizing the structure of the decoding site of the ribosome.
Authors: Demirci, H. / Wang, L. / Murphy, F.V. / Murphy, E.L. / Carr, J.F. / Blanchard, S.C. / Jogl, G. / Dahlberg, A.E. / Gregory, S.T.
History
DepositionMar 5, 2013Deposition site: RCSB / Processing site: RCSB
Revision 1.0Nov 6, 2013Provider: repository / Type: Initial release
Revision 1.1Dec 4, 2013Group: Database references

-
Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

-
Assembly

Deposited unit
A: 16S rRNA
B: RIBOSOMAL PROTEIN S2
C: RIBOSOMAL PROTEIN S3
D: RIBOSOMAL PROTEIN S4
E: RIBOSOMAL PROTEIN S5
F: RIBOSOMAL PROTEIN S6
G: RIBOSOMAL PROTEIN S7
H: RIBOSOMAL PROTEIN S8
I: RIBOSOMAL PROTEIN S9
J: RIBOSOMAL PROTEIN S10
K: RIBOSOMAL PROTEIN S11
L: RIBOSOMAL PROTEIN S12
M: RIBOSOMAL PROTEIN S13
N: RIBOSOMAL PROTEIN S14
O: RIBOSOMAL PROTEIN S15
P: RIBOSOMAL PROTEIN S16
Q: RIBOSOMAL PROTEIN S17
R: RIBOSOMAL PROTEIN S18
S: RIBOSOMAL PROTEIN S19
T: RIBOSOMAL PROTEIN S20
U: RIBOSOMAL PROTEIN THX
hetero molecules


Theoretical massNumber of molelcules
Total (without water)788,248195
Polymers783,93721
Non-polymers4,311174
Water5,026279
1


  • Idetical with deposited unit
  • defined by author
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Unit cell
Length a, b, c (Å)399.620, 399.620, 216.070
Angle α, β, γ (deg.)90.000, 90.000, 90.000
Int Tables number92
Space group name H-MP41212
Detailsbiological unit is a monomer

-
Components

-
RNA chain , 1 types, 1 molecules A

#1: RNA chain 16S rRNA


Mass: 494170.781 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: GenBank: M26923.1

-
RIBOSOMAL PROTEIN ... , 20 types, 20 molecules BCDEFGHIJKLMNOPQRSTU

#2: Protein RIBOSOMAL PROTEIN S2 /


Mass: 29317.703 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: P80371
#3: Protein RIBOSOMAL PROTEIN S3 /


Mass: 26751.076 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: P80372
#4: Protein RIBOSOMAL PROTEIN S4 /


Mass: 24373.447 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: P80373
#5: Protein RIBOSOMAL PROTEIN S5 /


Mass: 17583.416 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: Q5SHQ5
#6: Protein RIBOSOMAL PROTEIN S6 /


Mass: 11988.753 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: Q5SLP8
#7: Protein RIBOSOMAL PROTEIN S7 /


Mass: 18050.973 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: P17291
#8: Protein RIBOSOMAL PROTEIN S8 /


Mass: 15868.570 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: Q5SHQ2, UniProt: P0DOY9*PLUS
#9: Protein RIBOSOMAL PROTEIN S9 /


Mass: 14410.614 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: P80374
#10: Protein RIBOSOMAL PROTEIN S10 /


Mass: 11954.968 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: Q5SHN7
#11: Protein RIBOSOMAL PROTEIN S11 /


Mass: 13737.868 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: P80376
#12: Protein RIBOSOMAL PROTEIN S12 /


Mass: 14966.846 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: F6DEQ7, UniProt: Q5SHN3*PLUS
#13: Protein RIBOSOMAL PROTEIN S13 /


Mass: 14338.861 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: P80377
#14: Protein RIBOSOMAL PROTEIN S14 /


Mass: 7158.725 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: Q5SHQ1, UniProt: P0DOY6*PLUS
#15: Protein RIBOSOMAL PROTEIN S15 /


Mass: 10578.407 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: Q5SJ76
#16: Protein RIBOSOMAL PROTEIN S16 /


Mass: 10409.983 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: Q5SJH3
#17: Protein RIBOSOMAL PROTEIN S17 /


Mass: 12325.655 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: Q5SHP7, UniProt: P0DOY7*PLUS
#18: Protein RIBOSOMAL PROTEIN S18 /


Mass: 10258.299 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: Q5SLQ0
#19: Protein RIBOSOMAL PROTEIN S19 / 40S ribosomal protein S19


Mass: 10605.464 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: Q5SHP2
#20: Protein RIBOSOMAL PROTEIN S20 /


Mass: 11736.143 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: P80380
#21: Protein/peptide RIBOSOMAL PROTEIN THX / Ribosome


Mass: 3350.030 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Thermus thermophilus (bacteria) / Strain: HB8 / References: UniProt: Q5SIH3

-
Non-polymers , 3 types, 453 molecules

#22: Chemical...
ChemComp-MG / MAGNESIUM ION


Mass: 24.305 Da / Num. of mol.: 172 / Source method: obtained synthetically / Formula: Mg
#23: Chemical ChemComp-ZN / ZINC ION


Mass: 65.409 Da / Num. of mol.: 2 / Source method: obtained synthetically / Formula: Zn
#24: Water ChemComp-HOH / water / Water


Mass: 18.015 Da / Num. of mol.: 279 / Source method: isolated from a natural source / Formula: H2O

-
Experimental details

-
Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

-
Sample preparation

CrystalDensity Matthews: 5.5 Å3/Da / Density % sol: 77.64 %
Crystal growTemperature: 277 K / Method: vapor diffusion, hanging drop / pH: 6.5
Details: MPD , pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K

-
Data collection

DiffractionMean temperature: 100 K
Diffraction sourceSource: SYNCHROTRON / Site: NSLS / Beamline: X25 / Wavelength: 0.98 Å
DetectorType: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Mar 1, 2012
RadiationMonochromator: Monochromator: Double silicon(111) crystal monochromator with cryogenically-cooled first crystal and sagittally-bent second crystal horizontally-focusing at 3.3:1 demagnification.
Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 0.98 Å / Relative weight: 1
ReflectionNumber: 1473038 / Rmerge(I) obs: 0.117 / D res high: 3.85 Å / Num. obs: 163037 / % possible obs: 99.3
Diffraction reflection shell
Highest resolution (Å)Lowest resolution (Å)Num. obs% possible obs (%)IDRmerge(I) obs
3.853.951200299.911.079
3.954.061170399.910.784
4.064.181139099.910.615
4.184.31104299.910.472
4.34.451074499.810.372
4.454.61039799.710.295
4.64.78998499.510.242
4.784.97964099.610.188
4.975.19926799.510.165
5.445.74841399.210.127
5.746.09797599.210.116
6.096.51749698.910.105
6.517.03698098.910.092
7.037.7644898.710.083
7.78.61583498.510.078
8.619.94516198.110.073
9.9412.17438497.810.067
12.1717.22344797.310.062
17.2250186190.110.057
ReflectionResolution: 3.85→50 Å / Num. all: 163037 / Num. obs: 163037 / % possible obs: 99.3 % / Observed criterion σ(F): -3 / Observed criterion σ(I): -3 / Biso Wilson estimate: 144.028 Å2 / Rmerge(I) obs: 0.117 / Net I/σ(I): 11.37
Reflection shell
Resolution (Å)Rmerge(I) obsMean I/σ(I) obsNum. measured obsNum. unique obsDiffraction-ID% possible all
3.85-3.950.0111.911088912002199.9
3.95-4.060.0112.5410849811703199.9
4.06-4.180.0113.310295711390199.9
4.18-4.30.0114.29935111042199.9
4.3-4.450.0115.329998110744199.8
4.45-4.60.0116.729510410397199.7
4.6-4.780.0117.99882309984199.5
4.78-4.970.0119.94895449640199.6
4.97-5.190.01111.4839799267199.5
5.19-5.440.01112.81790618869199.6
5.44-5.740.01114.84778778413199.2
5.74-6.090.01115.78705547975199.2
6.09-6.510.01117.66688327496198.9
6.51-7.030.01119.86625446980198.9
7.03-7.70.01122.21575736448198.7
7.7-8.610.01123.71513985834198.5
8.61-9.940.01125.06448255161198.1
9.94-12.170.01126.68372824384197.8
12.17-17.220.01127.37292533447197.3
17.22-500.01127.36153061861190.1

-
Processing

Software
NameVersionClassificationNB
XSCALEdata scaling
PHENIXdev_1119refinement
PDB_EXTRACT3.11data extraction
CBASSdata collection
PHENIXdev_1119phasing
RefinementMethod to determine structure: FOURIER SYNTHESIS / Resolution: 3.85→47.286 Å / Occupancy max: 1 / Occupancy min: 0.2 / FOM work R set: 0.8753 / SU ML: 0.38 / σ(F): 1.99 / Phase error: 19.29 / Stereochemistry target values: ML
RfactorNum. reflection% reflectionSelection details
Rfree0.202 8210 5.04 %FROM PDB ENTRY 2VQE
Rwork0.1528 ---
obs0.1553 162952 99.27 %-
all-162952 --
Solvent computationShrinkage radii: 0.86 Å / VDW probe radii: 1.1 Å / Solvent model: FLAT BULK SOLVENT MODEL
Displacement parametersBiso max: 550 Å2 / Biso mean: 162.9576 Å2 / Biso min: 24.42 Å2
Refinement stepCycle: LAST / Resolution: 3.85→47.286 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms19088 32550 174 279 52091
Refine LS restraints
Refine-IDTypeDev idealNumber
X-RAY DIFFRACTIONf_bond_d0.01356265
X-RAY DIFFRACTIONf_angle_d1.97383703
X-RAY DIFFRACTIONf_chiral_restr0.09410423
X-RAY DIFFRACTIONf_plane_restr0.0094890
X-RAY DIFFRACTIONf_dihedral_angle_d19.94326147
LS refinement shell

Refine-ID: X-RAY DIFFRACTION / Total num. of bins used: 30

Resolution (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkNum. reflection all% reflection obs (%)
3.85-3.89370.33773040.258850505354100
3.8937-3.93950.29452830.23251375420100
3.9395-3.98750.28582780.23251475425100
3.9875-4.0380.28142750.215951245399100
4.038-4.09110.27652630.206551425405100
4.0911-4.14710.24862880.201151165404100
4.1471-4.20630.22712790.181951565435100
4.2063-4.2690.22892400.175151465386100
4.269-4.33570.22342700.167151665436100
4.3357-4.40670.20792820.163151155397100
4.4067-4.48270.22052570.163451635420100
4.4827-4.56410.22022290.156851715400100
4.5641-4.65180.20952710.150851435414100
4.6518-4.74670.19882910.142951265417100
4.7467-4.84980.19382600.132151335393100
4.8498-4.96250.1962520.138651865438100
4.9625-5.08650.18092660.131451805446100
5.0865-5.22380.18092850.123951495434100
5.2238-5.37730.16622750.121551465421100
5.3773-5.55060.17672820.11715165544799
5.5506-5.74870.16852500.11635151540199
5.7487-5.97840.17382540.11625196545099
5.9784-6.24990.17282860.11735125541199
6.2499-6.57860.17892870.12065166545399
6.5786-6.98960.16762690.11725190545999
6.9896-7.52730.16152750.11955162543799
7.5273-8.28110.17992870.12685197548499
8.2811-9.47110.19652790.14795192547198
9.4711-11.9010.19032960.14755190548698
11.901-47.28980.23852970.2145312560996
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
10.2966-0.0182-0.20410.35740.00660.29570.1119-0.19330.06610.08880.0058-0.1424-0.03750.2366-0.12491.1253-0.1724-0.19651.3106-0.25851.126382.8756-144.4929-9.6226
21.9439-0.53290.13551.2361-0.09830.6860.32390.32890.5704-0.13240.00410.1622-0.5186-0.0683-0.32771.3263-0.05810.38361.05090.13021.337826.0703-70.6284-24.5924
31.4298-2.466-0.65564.89190.9463-0.09350.34320.3721-0.401-0.0648-0.47690.85370.10290.11440.1711.4967-0.0372-0.22341.4812-0.26791.265858.2169-149.58824.2946
46.8052-1.9193-5.37025.0439-0.45455.83560.52471.4057-0.74750.98570.1226-0.319-1.6802-1.3191-0.7883.6181-0.2907-0.11533.4554-0.79031.643738.9565-97.451416.2527
56.97564.828-4.22629.0619-3.95497.96110.4622-0.3519-0.32341.5143-0.59180.1387-2.50230.35910.14541.5691-0.4326-0.0911.4712-0.28311.056599.484-71.948516.0075
68.8742.2129-0.60349.6184-5.85433.62670.8221-0.2851-0.48850.2053-1.0699-1.0980.59820.69820.19091.6479-0.43140.16521.6259-0.68511.5229104.2456-75.5788.5076
76.40713.2518-2.6614.3316-6.30512.0053-0.72990.7253-0.0261.8824-0.2990.4324-1.4599-1.57720.90991.7854-0.17580.27051.6464-0.54071.698891.1097-62.96081.1049
84.74274.8409-0.8765.3037-2.65358.54430.47561.1560.94730.55850.7117-1.4803-1.6354-0.8426-1.06591.6159-0.06390.63581.0499-0.22622.235882.2986-64.2518-10.5488
97.1996-5.12892.2464.49260.45535.68250.12971.55291.9383-1.28860.1706-0.6589-1.47690.2694-0.23252.6268-0.53730.52111.83820.34251.965969.046-53.6446-11.6916
105.5868-1.66545.24460.9022-0.45738.60190.3114-0.3870.23590.05630.2241-0.206-0.2018-0.2635-0.53941.6321-0.62560.17821.1091-0.34491.629294.9319-71.15390.0735
110.83470.56870.7813.72234.72685.9970.4058-1.12062.07840.0665-0.6178-0.8933-2.11710.2730.14332.4035-0.4803-0.24511.4683-0.44082.6799.8907-53.55815.4358
129.3296-0.5057-3.91011.53642.31344.68090.28210.94441.1348-0.68160.025-0.1975-0.4916-0.127-0.30271.754-0.01150.17271.08340.2611.178845.5114-64.4887-49.4446
134.35224.20283.36556.21051.03045.48330.62980.52360.3021-0.0457-0.23350.055-0.06121.0934-0.35081.35990.09760.4191.4305-0.06091.172557.0298-79.043-35.1478
148.46565.4276-4.63216.42451.35719.4977-0.43070.2478-1.1238-0.65930.7194-0.26821.28991.6002-0.36641.62720.2457-0.48231.5184-0.3271.584682.5717-111.8622-57.626
159.7829-5.34374.73777.7172-1.74252.45731.17510.73720.8211-0.92370.34780.4567-0.9673-0.4323-1.53821.6745-0.2540.30911.55050.08021.142277.6664-108.3781-45.108
163.70820.13692.68185.38632.11722.65220.2861-0.0465-0.17720.0274-0.1510.19341.4906-0.5893-0.09771.0725-0.14490.14031.291-0.24131.079296.5056-125.8322-52.2276
176.15123.43632.84392.85044.0437.917-0.48452.40030.5602-2.58341.3652-2.1334-0.70442.4621-0.9161.7377-0.07820.52371.8993-0.12311.3144102.4613-120.2538-68.3152
188.9772-4.6432-6.51165.93193.8744.66140.2588-1.52061.19360.25330.3513-0.768-1.3572.6207-0.66790.9142-0.3118-0.18911.6206-0.17011.303497.2086-115.6098-43.8722
193.77121.8737-4.25146.88233.48122.00390.69113.12680.7807-1.60360.04610.6378-1.2882-1.4099-0.70231.27920.5219-0.16441.43280.11570.935881.1181-96.372-27.5717
205.0066-6.2374-0.70092.00195.1134.38590.2847-0.3143-0.38860.00650.78740.7185-2.27840.4538-1.0151.64450.06620.27111.79930.24761.532259.54-92.8341-15.7604
216.7507-6.2703-7.45315.74366.85278.1638-0.1404-0.53651.0525-0.00350.3071-0.0315-0.83230.7072-0.27691.56480.06270.15971.1146-0.00951.112682.1384-94.0729-23.8889
222.389-0.31481.81944.63621.57182.1041-0.83640.71622.70040.4432-0.0561-1.2182-3.0611.19610.88652.4587-0.6340.19581.4998-0.01151.477178.1761-88.3854-24.1959
235.0508-4.9638-3.31764.88022.72619.7111.0551-0.87532.10610.2720.1543-4.1252-0.782.3419-1.13350.8279-0.10040.03361.43-0.19331.891297.664-101.0493-20.5576
242.8209-3.8858-0.99565.55680.49634.1999-1.44370.7477-4.01812.4257-0.23571.82052.4462-0.73531.68341.76-0.1125-0.09620.8753-0.69112.164387.8765-107.358-9.644
257.6573-7.5743-6.32987.68776.3255.2263-1.09950.6994-0.97761.1247-0.83651.53710.4108-0.02041.87721.1823-0.43980.27731.056-0.2111.321392.5885-112.2616-21.7233
265.9903-1.8316-5.05045.6511-2.40157.438-0.2277-0.06880.1709-0.43220.30630.217-0.8496-0.3487-0.10411.0619-0.1081-0.09751.0248-0.24511.004287.0153-105.7514-19.7329
275.9994.84985.79393.91634.68245.592-0.66660.40913.1698-1.12740.3241-2.4132-3.00812.31250.31921.5608-0.60390.11191.5271-0.12881.8368107.7779-100.5159-11.4507
286.6364-4.0034-2.41376.35783.57911.99830.9094-1.802-0.69850.9029-0.2680.18580.7250.225-0.57781.9863-0.9152-0.25652.18120.11941.031170.3909-110.33874.2573
297.4076-5.15460.03994.4678-1.94084.08980.0917-1.17780.72410.6205-0.0292-0.6164-0.16850.0239-0.08291.4157-0.588-0.00691.561-0.46751.42869.7464-108.691868.1258
303.54352.48952.25034.06225.09896.7877-1.14312.05470.3074-2.80161.2691-0.2915-1.01451.5075-0.23482.6926-1.1038-0.3962.2776-0.75211.038182.7118-96.956153.8734
315.6866-5.2002-3.21374.91392.56582.65671.5527-0.79584.7149-0.9722-0.3309-4.693-2.31271.0985-1.17872.2736-0.13540.46451.6219-0.24112.642337.827-62.60237.9518
325.47280.6876-6.99382.39230.74141.9991-0.2539-0.62163.85441.04581.07920.079-0.7305-0.0098-0.80722.42710.04180.73861.268-0.14982.488421.1166-45.582211.824
333.96272.2185.00224.07340.90287.7986-0.94610.8976-0.09220.77620.4661.49940.11980.42430.52511.7528-0.02751.15671.65220.05172.430512.2411-51.98529.7957
347.9113-6.2157-1.79984.97150.98222.51740.4115-4.07094.4832-0.9697-0.73610.5167-2.505-0.99350.30023.02180.19491.01531.7216-0.51792.29076.4956-46.308424.6466
352.7747-0.10721.69776.15970.65284.9989-0.4716-0.5488-0.18540.3541-0.7952-0.0725-0.3663-1.09771.23382.3138-0.44730.29272.0982-0.21710.965821.5888-63.401723.383
368.7131-4.99855.54014.5267-5.82318.92791.41370.5368-1.8069-2.3785-0.33050.17411.0097-0.8005-0.96572.2185-0.6387-0.17731.267-0.31580.877129.6977-79.499623.2579
376.3419-4.83080.89596.874-0.84611.98270.32980.0534-0.1723-1.1785-0.0226-1.1059-0.10710.5266-0.32042.1252-0.03510.97920.2094-0.11632.725419.1186-63.174316.7905
387.0035.02232.41025.7686-1.64526.4040.139-0.2241-0.18220.2651-0.04430.41190.723-2.0457-0.12981.72-0.75261.53511.9048-0.30112.57154.3617-58.416217.4235
396.3075-5.1607-1.54156.30483.45392.67890.6092-1.7048-0.74481.8869-0.58711.17620.6055-1.0654-0.10372.2814-1.26460.4431.8776-0.37411.535414.7229-69.21726.334
405.53212.4883-5.54326.2536-3.29635.67071.5832-0.92143.8061-0.4797-0.3941-0.89-2.07693.4762-1.24062.1603-0.9648-0.0122.46580.14641.708430.5339-79.311528.9176
419.17232.506-4.13259.6175-4.76645.78190.54880.4256-0.53050.384-0.15650.1226-0.6561-0.8929-0.43271.1027-0.37330.47171.5055-0.67351.3717101.3333-110.70829.875
428.2319-6.52776.25265.7452-5.54175.3211-0.2529-0.88871.28272.4009-0.3245-1.3378-1.75470.49320.56031.6279-0.39950.04431.7352-0.37941.2595105.8934-102.151910.9751
436.9649-1.4881.16768.919-7.39869.54550.10010.4303-0.71220.5654-1.2275-2.3638-0.42272.47231.2050.6031-0.1884-0.32672.2922-0.76822.2682114.6692-112.87925.9675
449.04070.8854-8.38489.4676-1.0598.5465-0.73390.1079-0.5535-0.36991.7066-2.1393-1.54382.7958-0.88621.3524-0.4837-0.4661.2167-0.06422.0158114.1903-104.76478.8823
459.06882.56630.62425.1104-4.24914.50550.7015-2.13760.14811.8035-1.19830.3769-0.8982-0.82710.57511.995-1.0559-0.39881.8686-0.66871.5554111.1375-105.214617.8235
465.7135-6.05645.46236.828-5.17826.0328-1.1082.40571.6477-0.4929-0.3094-0.69930.02590.85071.33511.6193-0.84220.36261.7604-0.17411.5416102.3507-91.7825-2.9167
478.6082-6.26774.14974.5924-2.82394.15870.56360.68830.0901-0.4891-0.47341.17730.00730.3881-0.13261.7003-0.6914-0.17281.3511-0.00721.1541100.4947-102.5761-1.6136
481.34471.3426-1.32321.3463-1.33061.31690.2048-1.37210.25350.9859-1.06430.2989-0.3061-0.79350.7571.5038-0.2967-0.43761.9449-0.58941.1636101.5207-125.49732.8052
496.216-4.72621.52044.1015-0.30351.7995-2.48161.5905-4.36260.097-0.2842.03192.8685-4.36722.73671.2112-0.27320.57722.4372-1.06962.148109.1761-127.1257-9.8512
509.67233.81714.83912.07731.48112.7434-0.1452.3615-0.6801-2.5787-1.5551.04981.35070.80821.87911.6435-0.31820.18361.9615-0.35011.2399105.0323-114.4022-12.6154
511.9872-0.96182.18186.7483-7.19168.517-0.86870.8683-0.36650.2648-0.02640.2408-0.3554-0.33120.7481.608-0.23130.20591.8885-0.47280.8875112.1697-118.9318-2.6802
524.4561-4.49240.7364.7476-2.05417.84160.49781.92272.2403-1.7879-1.0305-2.4024-0.65933.94130.49971.3936-0.24020.52071.9061-0.1471.5998116.2585-119.2455-6.1314
532.2313.38170.71195.44152.7358.27330.40760.6028-0.864-0.94360.12850.47530.1908-0.0298-0.39181.4467-0.4561-0.64051.8812-0.73751.3107106.9534-118.423-2.4191
545.83593.8696-0.46525.9326-2.50246.2595-0.09040.11220.9641-1.05360.2588-1.4136-1.5504-0.705-0.20052.47760.53960.5621.06740.28242.170425.5515-31.0869-8.3111
553.408-3.58244.96263.9961-5.14657.2448-0.6558-0.27890.0406-1.43950.54813.8769-1.4587-1.49210.06062.12390.5553-0.04021.6041.20352.675513.9697-31.3618-8.1337
564.37245.1252-0.37668.21531.86462.4430.5664-0.33061.25351.1739-1.00240.2972-0.7883-1.31330.44612.15350.4081.10791.22060.27792.250717.9121-36.96030.6188
574.37323.45773.28766.8833-0.82575.2571-0.5324-1.11880.8661-0.80961.20720.0002-0.564-0.3606-0.43482.10130.5130.73080.8977-0.13242.034724.7819-33.0012-4.4602
580.44220.656-0.26953.4374-3.80484.86880.5322-0.78211.36631.6126-0.36520.5738-0.7886-0.3032-0.13532.5744-0.96010.93541.9131-1.11642.50437.1508-30.46913.8132
597.64794.9961.79254.62090.45123.44041.02450.25471.0585-0.6867-0.7835-0.3181-1.6849-0.4773-0.27991.99930.01390.70141.4361-0.25281.643230.6854-54.064-8.1004
607.71025.7669-1.44054.3056-1.18037.7747-0.5142-0.9626-2.4784-1.4019-0.738-3.8020.7461-0.01981.18961.4334-0.16320.66441.87540.22792.239125.2363-75.9596-8.6982
615.3447-0.6341.21452.8964-5.38592.0324-0.52760.4844-0.9635-0.19851.1906-1.002-1.06620.2761-0.69741.5933-0.41010.57631.91210.10552.395238.043-39.3617-41.2987
620.28771.5704-1.198.8248-6.6554.9907-0.11061.17023.0960.50781.49152.232-1.016-0.7528-1.22482.9833-0.64311.02881.50050.24552.967834.1707-34.1934-36.7297
635.8663-3.3305-1.5622.66832.01332.0534-0.3186-1.61260.6503-1.1579-0.2693-1.0563-0.7863-2.12250.56851.7720.09720.64562.1996-0.69962.772328.0246-57.4875-31.6758
644.9653-4.02113.24167.9526-6.39315.47150.4482-0.6131.06972.45120.34340.9923-1.62050.1357-0.84421.4006-0.06050.51930.9582-0.18381.412832.1936-66.614-28.495
658.91-5.64861.74588.70882.13182.6675-0.6336-0.6602-0.85320.3830.68851.8193-1.5364-1.0137-0.0532.87150.24631.26171.2119-0.21492.19632.3755-29.5782-44.3026
667.11435.8925-6.07226.9992-4.16615.53290.23990.26980.64320.0976-0.4039-0.5478-0.45470.18340.07492.4886-1.33510.41472.91190.72471.607338.6629-29.7639-53.6462
674.42044.1244-1.0854.4879-1.47160.93440.44771.5455-0.5301-4.2586-1.6975-4.60921.40363.57081.37551.73960.17710.9292.74490.06641.685942.4511-43.2028-49.8619
686.35766.3522-2.50636.8408-0.61538.2223-0.4093-3.1904-3.3956-0.3670.53562.58081.1755-1.0131-0.3271.8216-0.89610.65861.96670.25742.643430.0042-42.5161-46.3633
696.0047-3.71771.13024.15650.0170.4786-0.3868-0.79650.27231.0187-0.1813-0.3659-0.81490.11960.44682.619-0.84590.55381.6516-0.72351.485534.9324-88.944553.0724
703.6765-2.0169-1.62335.6407-1.25691.95250.8866-0.66540.46621.1883-0.30990.33451.646-1.1459-0.4321.9989-0.75760.23191.8732-0.85421.673529.4148-90.439246.496
717.0005-2.3234-5.00921.40931.4963.63370.5153-0.3460.3884-0.25350.85190.0182-0.52781.2212-1.34581.335-0.42650.50471.3801-0.66392.288728.5877-82.323148.9826
729.3338-6.15821.99314.2484-0.17437.6761-0.451.08331.9241.0387-0.2118-1.826-0.71580.73070.69731.8051-0.45680.4971.3553-0.26091.844539.1232-82.743248.703
732.0333-1.7181-0.98654.7905-1.75122.4818-0.8794-0.98470.9960.62840.1383-0.4986-0.9999-0.06740.33752.4117-0.3992-0.11261.2523-1.0931.547441.3413-79.750853.8841
743.58466.21083.46582.00586.02423.36741.0836-1.8173-0.2673-0.0651-1.1588-0.14440.2808-1.4796-0.00961.7455-0.38560.211.4148-0.51581.753648.9014-103.472639.8883
759.36043.4997.23422.71321.55446.99481.8257-0.7874-1.02761.0263-0.10620.26221.45230.0852-1.68431.31990.0051-0.21241.0515-0.11821.044775.8772-135.7707-7.9486
764.12240.5249-2.00115.8811-2.07791.6453-0.3520.2983-0.2162-0.40440.54010.3404-0.0402-0.9301-0.13831.206-0.0636-0.4061.3446-0.28271.278452.5423-135.9204-31.8899
775.02297.0359-1.42639.9464-2.91799.96120.1371-0.4979-3.91192.14130.0655-1.66130.0462-1.087-0.2081.71380.7236-0.0891.75110.44652.6712-25.4137-65.7623-3.7746
782.9836-0.88382.73141.93830.07312.960.06131.16541.2677-0.46390.44260.584-0.264-0.5173-0.46070.9014-0.29210.16342.95751.06692.8201-19.4026-63.5418-7.0197
790.44231.41551.65746.60662.41639.8396-0.66690.13180.8517-0.0977-0.17171.1658-0.45310.42380.91221.32150.19350.09741.75870.4782.7909-25.2002-58.8263-10.2683
802.5533-1.3132-4.03129.32027.27429.4771-1.17411.2077-0.2281-0.7814-0.36671.9742-0.3108-1.86661.5361.2926-0.179-0.20792.030.29332.2001-22.4719-78.0365-22.1385
819.4682-7.72077.11197.0455-5.87795.34930.2422-1.82480.92770.45980.71841.2690.1543-3.3961-0.92351.0959-0.02590.48431.9866-0.0422.6982-10.347-88.466-28.4561
829.2411-4.497-1.25292.6105-1.17737.8874-1.06151.42880.8165-0.21121.08440.46810.679-0.6999-0.05391.1741-0.21960.19672.0849-0.05411.95410.3351-88.6189-17.5525
832.1951-1.51630.70467.7127-2.19676.7189-1.2382-0.0382-1.2378-0.7487-0.2367-0.1081-0.0977-0.15991.4161.102-0.49470.12232.4956-0.15111.604422.7437-81.3718-50.0644
845.46984.82446.91824.55265.95088.82641.4393-0.2168-1.66521.5961-0.1778-0.1798-1.09590.51-1.28862.90820.7512-0.55923.38610.04051.625411.8264-74.8719-52.231
858.96770.89545.95542.088-0.26392.00870.28940.06881.1174-0.19680.0839-0.7791-0.5615-0.5094-0.40691.2132-0.02910.01361.3295-0.04071.744916.8004-74.641-45.4857
862.4179-3.4022.25828.4138-4.14982.36931.4034-1.0474-0.14461.52130.4929-2.56571.2163-0.8294-1.9661.49050.0447-0.47121.3313-0.24561.984530.2088-76.1418-42.4934
871.7266-1.34640.19923.08362.25772.88180.0341-0.15410.56830.0263-0.2098-0.3188-0.1026-0.63710.24711.4119-0.060.27321.221-0.13922.363233.1058-67.5397-35.4247
881.9098-2.26332.72779.98152.399.1108-0.5001-1.4761.56072.59430.3867-2.0121-0.92550.74960.12262.0737-0.9638-0.47432.18-0.17021.326697.4217-124.224952.6086
898.49273.8069-0.66525.1572-0.5550.06021.0919-0.6274-0.48990.7645-0.1028-0.3851-0.39381.2679-0.98011.6326-0.5049-0.38012.0024-0.17780.964491.5123-128.16445.0423
905.2081-5.8845-5.46267.6195.28146.47241.28331.5015-2.9113-1.1043-1.05680.841-0.5805-0.8712-0.17051.6127-0.5335-0.55782.0672-0.24681.523391.196-130.28234.6871
919.1457-2.1915-4.86696.43763.71533.6863-0.00551.0593-0.464-0.1341-0.02871.59632.6735-0.86660.09211.6805-0.2379-0.68051.2091-0.09842.016101.6306-139.096340.906
925.0388-0.66384.63241.0004-2.10278.46390.53890.29090.01110.00940.3181-0.0040.00250.0346-0.79691.42780.22450.04071.7657-0.49741.3837103.7104-158.7021-38.68
933.2365-0.6352-1.13978.5722-6.36366.2891-0.1956-1.08340.75690.67810.0789-1.0498-0.47620.26940.09691.13790.0698-0.1581.7277-0.41961.4426106.235-159.5346-34.1731
944.3349-6.46083.84579.6127-5.71983.4023-0.25321.02350.8899-0.268-0.1853-2.0824-1.15372.0950.42261.4509-0.3080.32981.86-0.36921.8187114.4149-152.5449-43.7601
957.2179-2.82491.72362.9776-2.74992.70630.3507-0.8980.90431.7929-1.2528-1.8012-1.12652.44310.89731.319-0.0306-0.10272.6334-0.88471.8724120.2054-163.3012-29.6554
962.09381.25460.75321.9978-1.08162.15020.26561.3027-3.1699-2.0646-0.1784-1.1531.96330.5092-0.06491.53910.07930.05031.3727-0.32362.0297118.4164-166.4506-40.385
974.1371.01141.45148.04852.71131.23280.2122-0.89341.03281.3415-0.7950.06020.80.54680.57051.2684-0.0311-0.3681.9715-0.28421.1936103.5865-157.315214.9463
981.6432-2.54120.20566.7352-2.88273.6952-0.05220.3494-0.526-0.1713-0.14520.1907-0.4657-0.34010.17491.0172-0.0015-0.25911.5299-0.36191.1679103.0077-152.887912.3166
993.15450.08234.86150.10530.06747.5046-0.258-4.79331.2868-0.2897-0.41980.31760.3421-0.89560.56581.9731-0.00760.19711.9136-0.43210.954488.9469-146.60222.1355
1007.1898-3.84170.17783.6362-3.78.1979-0.7867-1.26994.73224.07640.8524-3.6902-3.4824-0.874-0.07492.64740.37450.06322.0853-0.75143.202271.3585-81.665946.3562
1011.65241.27532.56182.10110.18016.8501-0.5823.20015.667-3.0012-0.8763-5.1072-1.27241.77081.50413.2099-1.18040.87252.1836-0.13012.704378.2702-83.379153.2656
1021.32822.213-2.34363.6679-3.88254.10350.4929-1.51050.79151.9452-1.0783-1.2825-1.80971.49950.48291.8858-0.9422-0.14872.5108-0.62211.849376.419-96.547458.4601
1038.5184-6.94189.20445.6554-7.50059.946-0.689-1.47772.4161.4614-0.7383-1.6346-2.06890.77051.40672.0461-1.33440.58412.6844-0.97012.080570.2058-89.190557.4014
1042.0011-3.413-6.48345.90754.20864.89232.08491.51661.5427-2.26-0.4130.2509-2.5318-0.5264-1.75191.849-0.2965-0.11271.89590.47021.16862.8662-90.0248.678
1053.0137-0.1761-5.29862.4303-0.7639.81670.2894-0.6540.6736-0.09650.8251-0.67010.34040.2405-1.12021.8129-0.8730.05382.1479-0.48471.119571.9379-95.924548.9524
1060.69791.03160.59551.52770.90870.5780.1891-0.3944-0.2139-1.18650.68740.52260.5444-0.4453-0.92891.8836-0.745-0.20772.1085-0.02371.172356.0093-90.307453.7536
1071.53062.52952.53856.4566.28716.1207-0.0495-0.5682-1.49740.10730.50550.34542.1554-2.117-0.38451.2636-0.5712-0.22032.3720.94952.2588-8.5151-73.12-41.5643
1087.27785.14831.15028.47043.9787.9867-3.10885.80223.3302-4.0431.4353-0.5833-2.98361.64051.61352.5805-0.7991-0.41412.58020.89861.8153-12.9082-85.0503-56.7696
1097.236-4.4875-6.47389.0081-0.8979.6714-0.51440.7475-1.94531.1860.0602-0.8441.02251.11540.45341.86350.5498-0.29672.49490.08121.423-11.2133-92.4582-52.6129
1101.089-3.18812.55889.4001-7.1567.4166-0.99420.32751.98261.4499-0.434-1.969-1.65171.25171.37352.2365-0.3692-0.80242.44170.06211.8627-6.7935-82.7541-43.9168
1116.7265-7.27460.64238.1465-1.15493.60940.40410.5596-1.8548-0.66690.36451.78011.1651-1.1268-0.76771.7094-0.6302-0.40671.92880.02392.1337-12.5991-89.5868-43.8539
1129.28843.92723.31537.32363.44349.0934-0.9412-0.59551.69110.4623-0.49381.34080.8497-0.6311.40341.482-0.2490.3551.689-0.2061.6098-3.739-92.6914-33.4258
1136.6299-1.72715.58313.4784-1.6657.06581.39060.0689-1.1688-0.413-0.0661-0.21290.92440.4013-1.43981.4888-0.0004-0.28130.9823-0.3711.413499.5835-196.8281-5.833
1147.8789-5.69251.56144.1098-1.12680.30960.96310.3983-0.55160.04040.9792-1.82362.52530.2456-1.9751.57470.0606-0.17291.3491-0.17541.2969105.6215-188.6771-10.4147
1156.1802-2.75382.58918.2574-5.92584.3181-0.9755-1.5641.44711.32520.80460.4716-3.5909-1.76720.01641.43880.5722-0.34931.7173-0.94732.2101107.7771-189.80896.2263
1168.70312.16873.81464.0949-2.41394.85310.90230.30590.13870.0915-2.8275-0.26560.07091.10881.90811.87230.1725-0.62631.54190.03921.4496115.8445-198.231513.5011
1171.3545-1.452-0.78011.56480.9671.93160.8481-0.7529-1.14671.47260.2838-0.2292.0118-1.0605-1.09312.89490.42130.95761.83241.51883.9802-1.8484-65.3439-15.4562
1186.03273.73411.54799.0331-2.4512.12430.173-0.00581.4190.951-0.5899-0.2583-0.19960.07630.35771.6654-0.66160.63261.85920.12492.88042.9652-61.4392-17.6304
1195.1313-4.18831.2155.01682.09676.2551-0.7259-0.6855-2.2705-0.3006-0.2875-0.81880.15930.43010.97681.67510.29650.7232.290.58452.0695-1.4917-55.9038-23.2496
Refinement TLS group
IDRefine-IDRefine TLS-IDSelection detailsAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1chain 'A' and (resseq 5:920)A5 - 920
2X-RAY DIFFRACTION2chain 'A' and (resseq 921:1400)A921 - 1400
3X-RAY DIFFRACTION3chain 'A' and (resseq 1401:1532)A0
4X-RAY DIFFRACTION4chain 'A' and (resseq 1533:1541)A0
5X-RAY DIFFRACTION5chain 'B' and (resseq 7:25)B7 - 25
6X-RAY DIFFRACTION6chain 'B' and (resseq 26:64)B26 - 64
7X-RAY DIFFRACTION7chain 'B' and (resseq 65:86)B65 - 86
8X-RAY DIFFRACTION8chain 'B' and (resseq 87:122)B87 - 122
9X-RAY DIFFRACTION9chain 'B' and (resseq 123:148)B123 - 148
10X-RAY DIFFRACTION10chain 'B' and (resseq 149:226)B149 - 226
11X-RAY DIFFRACTION11chain 'B' and (resseq 227:240)B227 - 240
12X-RAY DIFFRACTION12chain 'C' and (resseq 2:112)C2 - 112
13X-RAY DIFFRACTION13chain 'C' and (resseq 113:207)C113 - 207
14X-RAY DIFFRACTION14chain 'D' and (resseq 2:34)D2 - 34
15X-RAY DIFFRACTION15chain 'D' and (resseq 35:67)D35 - 67
16X-RAY DIFFRACTION16chain 'D' and (resseq 68:148)D68 - 148
17X-RAY DIFFRACTION17chain 'D' and (resseq 149:181)D149 - 181
18X-RAY DIFFRACTION18chain 'D' and (resseq 182:209)D182 - 209
19X-RAY DIFFRACTION19chain 'E' and (resseq 5:14)E5 - 14
20X-RAY DIFFRACTION20chain 'E' and (resseq 15:27)E15 - 27
21X-RAY DIFFRACTION21chain 'E' and (resseq 28:50)E28 - 50
22X-RAY DIFFRACTION22chain 'E' and (resseq 51:63)E51 - 63
23X-RAY DIFFRACTION23chain 'E' and (resseq 64:79)E64 - 79
24X-RAY DIFFRACTION24chain 'E' and (resseq 80:86)E80 - 86
25X-RAY DIFFRACTION25chain 'E' and (resseq 87:103)E87 - 103
26X-RAY DIFFRACTION26chain 'E' and (resseq 104:140)E104 - 140
27X-RAY DIFFRACTION27chain 'E' and (resseq 141:154)E141 - 154
28X-RAY DIFFRACTION28chain 'F' and (resseq 1:32)F1 - 32
29X-RAY DIFFRACTION29chain 'F' and (resseq 33:92)F33 - 92
30X-RAY DIFFRACTION30chain 'F' and (resseq 93:101)F93 - 101
31X-RAY DIFFRACTION31chain 'G' and (resseq 2:11)G2 - 11
32X-RAY DIFFRACTION32chain 'G' and (resseq 12:20)G12 - 20
33X-RAY DIFFRACTION33chain 'G' and (resseq 21:52)G21 - 52
34X-RAY DIFFRACTION34chain 'G' and (resseq 53:57)G53 - 57
35X-RAY DIFFRACTION35chain 'G' and (resseq 58:79)G58 - 79
36X-RAY DIFFRACTION36chain 'G' and (resseq 80:92)G80 - 92
37X-RAY DIFFRACTION37chain 'G' and (resseq 93:109)G93 - 109
38X-RAY DIFFRACTION38chain 'G' and (resseq 110:129)G110 - 129
39X-RAY DIFFRACTION39chain 'G' and (resseq 130:144)G130 - 144
40X-RAY DIFFRACTION40chain 'G' and (resseq 145:156)G145 - 156
41X-RAY DIFFRACTION41chain 'H' and (resseq 1:18)H1 - 18
42X-RAY DIFFRACTION42chain 'H' and (resseq 19:29)H19 - 29
43X-RAY DIFFRACTION43chain 'H' and (resseq 30:41)H30 - 41
44X-RAY DIFFRACTION44chain 'H' and (resseq 42:53)H42 - 53
45X-RAY DIFFRACTION45chain 'H' and (resseq 54:62)H54 - 62
46X-RAY DIFFRACTION46chain 'H' and (resseq 63:72)H63 - 72
47X-RAY DIFFRACTION47chain 'H' and (resseq 73:85)H73 - 85
48X-RAY DIFFRACTION48chain 'H' and (resseq 86:95)H86 - 95
49X-RAY DIFFRACTION49chain 'H' and (resseq 96:100)H96 - 100
50X-RAY DIFFRACTION50chain 'H' and (resseq 101:106)H101 - 106
51X-RAY DIFFRACTION51chain 'H' and (resseq 107:116)H107 - 116
52X-RAY DIFFRACTION52chain 'H' and (resseq 117:127)H117 - 127
53X-RAY DIFFRACTION53chain 'H' and (resseq 128:138)H128 - 138
54X-RAY DIFFRACTION54chain 'I' and (resseq 2:25)I2 - 25
55X-RAY DIFFRACTION55chain 'I' and (resseq 26:32)I26 - 32
56X-RAY DIFFRACTION56chain 'I' and (resseq 33:53)I33 - 53
57X-RAY DIFFRACTION57chain 'I' and (resseq 54:88)I54 - 88
58X-RAY DIFFRACTION58chain 'I' and (resseq 89:97)I89 - 97
59X-RAY DIFFRACTION59chain 'I' and (resseq 98:117)I98 - 117
60X-RAY DIFFRACTION60chain 'I' and (resseq 118:128)I118 - 128
61X-RAY DIFFRACTION61chain 'J' and (resseq 3:29)J3 - 29
62X-RAY DIFFRACTION62chain 'J' and (resseq 30:42)J30 - 42
63X-RAY DIFFRACTION63chain 'J' and (resseq 43:47)J43 - 47
64X-RAY DIFFRACTION64chain 'J' and (resseq 48:70)J48 - 70
65X-RAY DIFFRACTION65chain 'J' and (resseq 71:78)J71 - 78
66X-RAY DIFFRACTION66chain 'J' and (resseq 79:85)J79 - 85
67X-RAY DIFFRACTION67chain 'J' and (resseq 86:93)J86 - 93
68X-RAY DIFFRACTION68chain 'J' and (resseq 94:100)J94 - 100
69X-RAY DIFFRACTION69chain 'K' and (resseq 11:34)K11 - 34
70X-RAY DIFFRACTION70chain 'K' and (resseq 35:57)K35 - 57
71X-RAY DIFFRACTION71chain 'K' and (resseq 58:75)K58 - 75
72X-RAY DIFFRACTION72chain 'K' and (resseq 76:100)K76 - 100
73X-RAY DIFFRACTION73chain 'K' and (resseq 101:110)K101 - 110
74X-RAY DIFFRACTION74chain 'K' and (resseq 111:126)K111 - 126
75X-RAY DIFFRACTION75chain 'L' and (resseq 5:32)L5 - 32
76X-RAY DIFFRACTION76chain 'L' and (resseq 33:128)L33 - 128
77X-RAY DIFFRACTION77chain 'M' and (resseq 2:14)M2 - 14
78X-RAY DIFFRACTION78chain 'M' and (resseq 15:21)M15 - 21
79X-RAY DIFFRACTION79chain 'M' and (resseq 22:61)M22 - 61
80X-RAY DIFFRACTION80chain 'M' and (resseq 62:83)M62 - 83
81X-RAY DIFFRACTION81chain 'M' and (resseq 84:93)M84 - 93
82X-RAY DIFFRACTION82chain 'M' and (resseq 94:119)M94 - 119
83X-RAY DIFFRACTION83chain 'N' and (resseq 2:11)N2 - 11
84X-RAY DIFFRACTION84chain 'N' and (resseq 12:16)N12 - 16
85X-RAY DIFFRACTION85chain 'N' and (resseq 17:24)N17 - 24
86X-RAY DIFFRACTION86chain 'N' and (resseq 25:29)N25 - 29
87X-RAY DIFFRACTION87chain 'N' and (resseq 30:61)N30 - 61
88X-RAY DIFFRACTION88chain 'O' and (resseq 2:15)O2 - 15
89X-RAY DIFFRACTION89chain 'O' and (resseq 16:49)O16 - 49
90X-RAY DIFFRACTION90chain 'O' and (resseq 50:73)O50 - 73
91X-RAY DIFFRACTION91chain 'O' and (resseq 74:88)O74 - 88
92X-RAY DIFFRACTION92chain 'P' and (resseq 1:19)P1 - 19
93X-RAY DIFFRACTION93chain 'P' and (resseq 20:43)P20 - 43
94X-RAY DIFFRACTION94chain 'P' and (resseq 44:52)P44 - 52
95X-RAY DIFFRACTION95chain 'P' and (resseq 53:62)P53 - 62
96X-RAY DIFFRACTION96chain 'P' and (resseq 63:83)P63 - 83
97X-RAY DIFFRACTION97chain 'Q' and (resseq 2:17)Q2 - 17
98X-RAY DIFFRACTION98chain 'Q' and (resseq 18:82)Q18 - 82
99X-RAY DIFFRACTION99chain 'Q' and (resseq 83:100)Q83 - 100
100X-RAY DIFFRACTION100chain 'R' and (resseq 19:23)R19 - 23
101X-RAY DIFFRACTION101chain 'R' and (resseq 24:28)R24 - 28
102X-RAY DIFFRACTION102chain 'R' and (resseq 29:36)R29 - 36
103X-RAY DIFFRACTION103chain 'R' and (resseq 37:43)R37 - 43
104X-RAY DIFFRACTION104chain 'R' and (resseq 44:52)R44 - 52
105X-RAY DIFFRACTION105chain 'R' and (resseq 53:76)R53 - 76
106X-RAY DIFFRACTION106chain 'R' and (resseq 77:88)R77 - 88
107X-RAY DIFFRACTION107chain 'S' and (resseq 2:12)S2 - 12
108X-RAY DIFFRACTION108chain 'S' and (resseq 13:25)S13 - 25
109X-RAY DIFFRACTION109chain 'S' and (resseq 26:35)S26 - 35
110X-RAY DIFFRACTION110chain 'S' and (resseq 36:40)S36 - 40
111X-RAY DIFFRACTION111chain 'S' and (resseq 41:70)S41 - 70
112X-RAY DIFFRACTION112chain 'S' and (resseq 71:81)S71 - 81
113X-RAY DIFFRACTION113chain 'T' and (resseq 8:66)T8 - 66
114X-RAY DIFFRACTION114chain 'T' and (resseq 67:75)T67 - 75
115X-RAY DIFFRACTION115chain 'T' and (resseq 76:91)T76 - 91
116X-RAY DIFFRACTION116chain 'T' and (resseq 92:106)T92 - 106
117X-RAY DIFFRACTION117chain 'U' and (resseq 2:8)U2 - 8
118X-RAY DIFFRACTION118chain 'U' and (resseq 9:15)U9 - 15
119X-RAY DIFFRACTION119chain 'U' and (resseq 16:25)U16 - 25

+
About Yorodumi

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

EMDB accession codes are about to change! (news from PDBe EMDB page)

  • The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
  • The EM Navigator/Yorodumi systems omit the EMD- prefix.

Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator

External links:EMDB Accession Codes are Changing Soon! / Contact to PDBj

+
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary.
  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Yorodumi

Thousand views of thousand structures

  • Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
  • This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
  • The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.

Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi

Read more