- PDB-4imy: The AFF4 scaffold binds human P-TEFb adjacent to HIV Tat -
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Basic information
Entry
Database: PDB / ID: 4imy
Title
The AFF4 scaffold binds human P-TEFb adjacent to HIV Tat
Components
AF4/FMR2 family member 4
Cyclin-T1
Cyclin-dependent kinase 9
Keywords
TRANSFERASE / Transcriptional CDK9-CycT1 complex / phosphorylated / intrinsically disordered AFF4 / regulation of transcription elongation / Ser/Thr kinase / phosphorylation of PolII-CTD / DSIF / and NELF / HIV-1 Tat / Host-virus interaction / phosphoprotein / nucleus
Function / homology
Function and homology information
super elongation complex / P-TEFb complex / Interactions of Tat with host cellular proteins / nucleus localization / 7SK snRNA binding / cyclin/CDK positive transcription elongation factor complex / regulation of mRNA 3'-end processing / regulation of muscle cell differentiation / positive regulation of protein localization to chromatin / transcription elongation factor activity ...super elongation complex / P-TEFb complex / Interactions of Tat with host cellular proteins / nucleus localization / 7SK snRNA binding / cyclin/CDK positive transcription elongation factor complex / regulation of mRNA 3'-end processing / regulation of muscle cell differentiation / positive regulation of protein localization to chromatin / transcription elongation factor activity / regulation of cyclin-dependent protein serine/threonine kinase activity / cyclin-dependent protein serine/threonine kinase activator activity / host-mediated activation of viral transcription / [RNA-polymerase]-subunit kinase / RNA polymerase binding / positive regulation of DNA-templated transcription, elongation / negative regulation of protein localization to chromatin / transcription elongation-coupled chromatin remodeling / cellular response to cytokine stimulus / spermatid development / replication fork processing / Pausing and recovery of Tat-mediated HIV elongation / Tat-mediated HIV elongation arrest and recovery / RNA polymerase II transcribes snRNA genes / HIV elongation arrest and recovery / Pausing and recovery of HIV elongation / cyclin-dependent kinase / Tat-mediated elongation of the HIV-1 transcript / cyclin-dependent protein serine/threonine kinase activity / Formation of HIV-1 elongation complex containing HIV-1 Tat / Formation of HIV elongation complex in the absence of HIV Tat / regulation of DNA repair / RNA Polymerase II Transcription Elongation / Formation of RNA Pol II elongation complex / RNA Polymerase II Pre-transcription Events / RNA polymerase II CTD heptapeptide repeat kinase activity / response to endoplasmic reticulum stress / transcription elongation factor complex / transcription initiation at RNA polymerase II promoter / TP53 Regulates Transcription of DNA Repair Genes / transcription elongation by RNA polymerase II / positive regulation of transcription elongation by RNA polymerase II / SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription / molecular condensate scaffold activity / euchromatin / transcription coactivator binding / PML body / cytoplasmic ribonucleoprotein granule / fibrillar center / kinase activity / regulation of gene expression / DNA-binding transcription factor binding / Estrogen-dependent gene expression / transcription by RNA polymerase II / cell population proliferation / transcription cis-regulatory region binding / regulation of cell cycle / protein kinase activity / nuclear body / protein phosphorylation / response to xenobiotic stimulus / RNA polymerase II cis-regulatory region sequence-specific DNA binding / cell division / protein serine kinase activity / DNA repair / protein serine/threonine kinase activity / chromatin binding / protein kinase binding / positive regulation of transcription by RNA polymerase II / DNA binding / nucleoplasm / ATP binding / nucleus / membrane / cytosol Similarity search - Function
Single alpha-helices involved in coiled-coils or other helix-helix interfaces - #2670 / AF4/FMR2 family / AF4 interaction motif / AF4/FMR2, C-terminal homology domain / AF-4 proto-oncoprotein N-terminal region / AF4 interaction motif / AFF4, C-terminal homology domain / : / Cyclin-T2-like, C-terminal domain / Cyclin/Cyclin-like subunit Ssn8 ...Single alpha-helices involved in coiled-coils or other helix-helix interfaces - #2670 / AF4/FMR2 family / AF4 interaction motif / AF4/FMR2, C-terminal homology domain / AF-4 proto-oncoprotein N-terminal region / AF4 interaction motif / AFF4, C-terminal homology domain / : / Cyclin-T2-like, C-terminal domain / Cyclin/Cyclin-like subunit Ssn8 / Cyclin-like / Cyclin A; domain 1 / Cyclin, N-terminal / Cyclin, N-terminal domain / Single alpha-helices involved in coiled-coils or other helix-helix interfaces / Cyclin-like / domain present in cyclins, TFIIB and Retinoblastoma / Cyclin-like superfamily / : / Helix non-globular / Special / Phosphorylase Kinase; domain 1 / Phosphorylase Kinase; domain 1 / Transferase(Phosphotransferase) domain 1 / Transferase(Phosphotransferase); domain 1 / Serine/threonine-protein kinase, active site / Serine/Threonine protein kinases active-site signature. / Protein kinase domain / Serine/Threonine protein kinases, catalytic domain / Protein kinase, ATP binding site / Protein kinases ATP-binding region signature. / Protein kinase domain profile. / Protein kinase domain / Protein kinase-like domain superfamily / 2-Layer Sandwich / Orthogonal Bundle / Mainly Alpha / Alpha Beta Similarity search - Domain/homology
ADENOSINE MONOPHOSPHATE / Cyclin-T1 / Cyclin-dependent kinase 9 / AF4/FMR2 family member 4 Similarity search - Component
Mass: 38226.309 Da / Num. of mol.: 3 / Fragment: 1-330 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: CDK9, CDC2L4, TAK / Production host: Spodoptera frugiperda (fall armyworm) References: UniProt: P50750, cyclin-dependent kinase, [RNA-polymerase]-subunit kinase
#2: Protein
Cyclin-T1 / CycT1 / Cyclin-T
Mass: 30618.959 Da / Num. of mol.: 3 / Fragment: 1-264 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: CCNT1 / Production host: Spodoptera frugiperda (fall armyworm) / References: UniProt: O60563
#3: Protein
AF4/FMR2familymember4 / ALL1-fused gene from chromosome 5q31 protein / Protein AF-5q31 / Major CDK9 elongation factor- ...ALL1-fused gene from chromosome 5q31 protein / Protein AF-5q31 / Major CDK9 elongation factor-associated protein
Mass: 8789.776 Da / Num. of mol.: 3 / Fragment: 2-73 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: AFF4, AF5Q31, MCEF, HSPC092 / Production host: Escherichia coli (E. coli) / References: UniProt: Q9UHB7