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- PDB-4gcr: STRUCTURE OF THE BOVINE EYE LENS PROTEIN GAMMA-B (GAMMA-II)-CRYST... -
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Open data
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Basic information
Entry | Database: PDB / ID: 4gcr | |||||||||
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Title | STRUCTURE OF THE BOVINE EYE LENS PROTEIN GAMMA-B (GAMMA-II)-CRYSTALLIN AT 1.47 ANGSTROMS | |||||||||
![]() | GAMMA-B CRYSTALLIN | |||||||||
![]() | EYE LENS PROTEIN | |||||||||
Function / homology | ![]() structural constituent of eye lens / lens development in camera-type eye / visual perception Similarity search - Function | |||||||||
Biological species | ![]() ![]() | |||||||||
Method | ![]() | |||||||||
![]() | Slingsby, C. / Najmudin, S. / Nalini, V. / Driessen, H.P.C. / Blundell, T.L. / Moss, D.S. / Lindley, P. | |||||||||
![]() | ![]() Title: Structure of the bovine eye lens protein gammaB(gammaII)-crystallin at 1.47 A. Authors: Najmudin, S. / Nalini, V. / Driessen, H.P. / Slingsby, C. / Blundell, T.L. / Moss, D.S. / Lindley, P.F. #1: ![]() Title: X-Ray Studies of the Lens Specific Proteins, the Crystallins Authors: Summers, L. / Wistow, G. / Narebor, M. / Moss, D. / Lindley, P. / Slingsby, C. / Blundell, T. / Bartunik, H. / Bartels, K. #2: ![]() Title: Gamma-II Crystallin at 1.9 Angstrom Resolution Authors: Wistow, G. / Turnell, B. / Summers, L. / Slingsby, C. / Moss, D. / Miller, L. / Lindley, P. / Blundell, T. #3: ![]() Title: X-Ray Analysis of Gamma Crystallin II Authors: Blundell, T. / Lindley, P. / Miller, L. / Moss, D. / Slingsby, C. / Tickle, I. / Turnell, B. / Wistow, G. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 53 KB | Display | ![]() |
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PDB format | ![]() | 37.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 398.5 KB | Display | ![]() |
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Full document | ![]() | 408.5 KB | Display | |
Data in XML | ![]() | 7.5 KB | Display | |
Data in CIF | ![]() | 11.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 20992.559 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() |
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#2: Water | ChemComp-HOH / |
Compound details | THERE IS A BETA-BRIDGE BETWEEN RESIDUES 119 - 121 AND 162 - 164. |
Has protein modification | Y |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.93 Å3/Da / Density % sol: 36.26 % | ||||||||||||||||||||
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Crystal grow | *PLUS Temperature: 0 K / pH: 7 / Method: unknown / Details: Carlisle, C.H.,(1977) J. Mol. Biol., 110, 417. | ||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Reflection | *PLUS Highest resolution: 1.47 Å / Lowest resolution: 9999 Å / Num. obs: 26151 / Rmerge(I) obs: 0.084 / Num. measured all: 118540 |
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Processing
Software | Name: RESTRAIN / Classification: refinement | ||||||||||||
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Refinement | Rfactor obs: 0.181 / Highest resolution: 1.47 Å Details: THE QUANTITY GIVEN IN THE TEMPERATURE FACTOR COLUMN OF THE ATOM AND HETATM RECORDS BELOW IS UISO (U**2), WHICH IS THE MEAN-SQUARE AMPLITUDE VIBRATION. THE TEMPERATURE FACTOR, B, CAN BE ...Details: THE QUANTITY GIVEN IN THE TEMPERATURE FACTOR COLUMN OF THE ATOM AND HETATM RECORDS BELOW IS UISO (U**2), WHICH IS THE MEAN-SQUARE AMPLITUDE VIBRATION. THE TEMPERATURE FACTOR, B, CAN BE DERIVED BY THE RELATION: B = 8*(PI)**2*U**2. | ||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 1.47 Å
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Refine LS restraints |
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Refinement | *PLUS Highest resolution: 1.47 Å / Lowest resolution: 8 Å / Rfactor obs: 0.181 / Num. reflection obs: 29773 | ||||||||||||
Solvent computation | *PLUS | ||||||||||||
Displacement parameters | *PLUS |