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- PDB-1prr: NMR-DERIVED THREE-DIMENSIONAL SOLUTION STRUCTURE OF PROTEIN S COM... -

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Basic information

Entry
Database: PDB / ID: 1prr
TitleNMR-DERIVED THREE-DIMENSIONAL SOLUTION STRUCTURE OF PROTEIN S COMPLEXED WITH CALCIUM
ComponentsDEVELOPMENT-SPECIFIC PROTEIN S
KeywordsBINDING PROTEIN
Function / homology
Function and homology information


sporulation resulting in formation of a cellular spore / metal ion binding
Similarity search - Function
Crystallins / Gamma-B Crystallin; domain 1 / Beta/Gamma crystallin / Crystallins beta and gamma 'Greek key' motif profile. / Beta/gamma crystallins / Beta/gamma crystallin / Gamma-crystallin-like / Sandwich / Mainly Beta
Similarity search - Domain/homology
Development-specific protein S
Similarity search - Component
Biological speciesMyxococcus xanthus (bacteria)
MethodSOLUTION NMR
AuthorsBagby, S. / Harvey, T.S. / Eagle, S.G. / Inouye, S. / Ikura, M.
Citation
Journal: Structure / Year: 1994
Title: NMR-derived three-dimensional solution structure of protein S complexed with calcium.
Authors: Bagby, S. / Harvey, T.S. / Eagle, S.G. / Inouye, S. / Ikura, M.
#1: Journal: Proc.Natl.Acad.Sci.USA / Year: 1994
Title: Structural Similarity of a Developmentally Regulated Bacterial Spore Coat Protein to Betagamma-Crystallins of the Vertebrate Eye Lens
Authors: Bagby, S. / Harvey, T.S. / Eagle, S.G. / Inouye, S. / Ikura, M.
#2: Journal: Biochemistry / Year: 1994
Title: Unusual Helix-Containing Greek Keys in Development-Specific Ca2+-Binding Protein S. 1H, 15N and 13C Assignments and Secondary Structure Determined Using Multidimensional Double and Triple ...Title: Unusual Helix-Containing Greek Keys in Development-Specific Ca2+-Binding Protein S. 1H, 15N and 13C Assignments and Secondary Structure Determined Using Multidimensional Double and Triple Resonance Heteronuclear NMR Spectroscopy
Authors: Bagby, S. / Harvey, T.S. / Kay, L.E. / Eagle, S.G. / Inouye, S. / Ikura, M.
History
DepositionMar 25, 1994Processing site: BNL
Revision 1.0Aug 31, 1994Provider: repository / Type: Initial release
Revision 1.1Mar 24, 2008Group: Version format compliance
Revision 1.2Jul 13, 2011Group: Version format compliance
Revision 1.3Mar 2, 2022Group: Database references / Derived calculations / Other
Category: database_2 / pdbx_database_status ...database_2 / pdbx_database_status / pdbx_struct_assembly / pdbx_struct_oper_list / struct_conn / struct_site
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_database_status.process_site / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn.ptnr2_label_seq_id / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id
Revision 1.4May 22, 2024Group: Data collection / Category: chem_comp_atom / chem_comp_bond

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: DEVELOPMENT-SPECIFIC PROTEIN S
hetero molecules


Theoretical massNumber of molelcules
Total (without water)18,8863
Polymers18,8061
Non-polymers802
Water00
1


  • Idetical with deposited unit
  • defined by author
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Atom site foot note1: SURFACE LOOPS AT RESIDUES 33 - 40, 72 - 80, 123 - 129, AND 159 - 168 ARE RELATIVELY POORLY DEFINED.
NMR ensembles
DataCriteria
Number of conformers (submitted / calculated)1 / -
Representative

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Components

#1: Protein DEVELOPMENT-SPECIFIC PROTEIN S


Mass: 18805.865 Da / Num. of mol.: 1
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Myxococcus xanthus (bacteria) / References: UniProt: P02966
#2: Chemical ChemComp-CA / CALCIUM ION


Mass: 40.078 Da / Num. of mol.: 2 / Source method: obtained synthetically / Formula: Ca

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Experimental details

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Experiment

ExperimentMethod: SOLUTION NMR

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Processing

Software
NameClassification
X-PLORmodel building
X-PLORrefinement
X-PLORphasing
NMR softwareName: X-PLOR / Developer: BRUNGER / Classification: refinement
NMR ensembleConformers submitted total number: 1

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