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Open data
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Basic information
Entry | Database: PDB / ID: 4bct | ||||||
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Title | Crystal structure of kiwi-fruit allergen Act d 2 | ||||||
![]() | THAUMATIN-LIKE PROTEIN | ||||||
![]() | ALLERGEN / TLP | ||||||
Function / homology | ![]() defense response to fungus / killing of cells of another organism / extracellular region Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Pavkov-Keller, T. / Bublin, M. / Jankovic, M. / Breiteneder, H. / Keller, W. | ||||||
![]() | ![]() Title: Crystal Structure of Kiwi-Fruit Allergen Act D 2 Authors: Pavkov-Keller, T. / Bublin, M. / Jankovic, M. / Breiteneder, H. / Keller, W. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 103.9 KB | Display | ![]() |
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PDB format | ![]() | 84 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 433.2 KB | Display | ![]() |
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Full document | ![]() | 435.4 KB | Display | |
Data in XML | ![]() | 14.4 KB | Display | |
Data in CIF | ![]() | 22.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 21631.193 Da / Num. of mol.: 1 / Fragment: RESIDUES 25-225 / Source method: isolated from a natural source / Source: (natural) ![]() |
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#2: Chemical | ChemComp-EPE / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.98 Å3/Da / Density % sol: 38 % / Description: NONE |
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Crystal grow | Details: 22-30% PEG 6000, PH 6.8-7.5 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARRESEARCH / Detector: CCD |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 0.98→50 Å / Num. obs: 97776 / % possible obs: 99 % / Observed criterion σ(I): 2.5 / Redundancy: 4 % / Rmerge(I) obs: 0.04 / Net I/σ(I): 29.7 |
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Processing
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Refinement | Method to determine structure: OTHER Starting model: NONE Resolution: 0.98→50 Å / Cor.coef. Fo:Fc: 0.981 / Cor.coef. Fo:Fc free: 0.976 / SU B: 0.398 / SU ML: 0.01 / Cross valid method: THROUGHOUT / ESU R: 0.018 / ESU R Free: 0.019 / Stereochemistry target values: MAXIMUM LIKELIHOOD Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES - REFINED INDIVIDUALLY
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 10.476 Å2
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Refinement step | Cycle: LAST / Resolution: 0.98→50 Å
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Refine LS restraints |
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