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Yorodumi- PDB-3zry: Rotor architecture in the F(1)-c(10)-ring complex of the yeast F-... -
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Basic information
| Entry | Database: PDB / ID: 3zry | |||||||||
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| Title | Rotor architecture in the F(1)-c(10)-ring complex of the yeast F-ATP synthase | |||||||||
 Components | 
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 Keywords | HYDROLASE / ATP-BINDING / F(1)-F(O)ATP SYNTHASE / MITOCHONDRIA / MOLECULAR MOTOR / CENTRAL STALK / MEMBRANE PROTEIN / C-RING | |||||||||
| Function / homology |  Function and homology informationMitochondrial protein degradation / proton transmembrane transporter activity / proton motive force-driven ATP synthesis / proton-transporting two-sector ATPase complex, proton-transporting domain / mitochondrial nucleoid / proton motive force-driven mitochondrial ATP synthesis / proton-transporting ATPase activity, rotational mechanism / H+-transporting two-sector ATPase / proton-transporting ATP synthase complex / proton-transporting ATP synthase activity, rotational mechanism ...Mitochondrial protein degradation / proton transmembrane transporter activity / proton motive force-driven ATP synthesis / proton-transporting two-sector ATPase complex, proton-transporting domain / mitochondrial nucleoid / proton motive force-driven mitochondrial ATP synthesis / proton-transporting ATPase activity, rotational mechanism / H+-transporting two-sector ATPase / proton-transporting ATP synthase complex / proton-transporting ATP synthase activity, rotational mechanism / ADP binding / mitochondrial intermembrane space / mitochondrial inner membrane / lipid binding / ATP hydrolysis activity / mitochondrion / ATP binding / identical protein binding / cytosol Similarity search - Function  | |||||||||
| Biological species | ![]()  | |||||||||
| Method |  X-RAY DIFFRACTION /  SYNCHROTRON /  MOLECULAR REPLACEMENT / Resolution: 6.5 Å  | |||||||||
 Authors | Giraud, M.-F. / Dautant, A. | |||||||||
 Citation |  Journal: J.Struct.Biol. / Year: 2012Title: Rotor Architecture in the Yeast and Bovine F(1)-C-Ring Complexes of F-ATP Synthase. Authors: Giraud, M.-F. / Paumard, P. / Sanchez, C. / Brethes, D. / Velours, J. / Dautant, A. #1:   Journal: J.Biol.Chem. / Year: 2010Title: Crystal Structure of the Mgadp-Inhibited State of the Yeast F1C10-ATP Synthase. Authors: Dautant, A. / Velours, J. / Giraud, M. #2: Journal: J.Bioenerg.Biomembr. / Year: 2009 Title: Hydrogenated and Fluorinated Surfactants Derived from Tris(Hydroxymethyl)-Acrylamidomethane Allow the Purification of a Highly Active Yeast F1-F0 ATP-Synthase with an Enhanced Stability. Authors: Talbot, J.-C. / Dautant, A. / Polidori, A. / Pucci, B. / Cohen-Bouhacina, T. / Maali, A. / Salin, B. / Brethes, D. / Velours, J. / Giraud, M.-F. #3:   Journal: Science / Year: 1999Title: Molecular Architecture of the Rotary Motor in ATP Synthase Authors: Stock, D. / Leslie, A.G.W. / Walker, J.E. #4:   Journal: Embo J. / Year: 2006Title: Novel Features of the Rotary Catalytic Mechanism Revealed in the Structure of Yeast F1 ATPase Authors: Kabaleeswaran, V. / Puri, N. / Walker, J.E. / Leslie, A.G. / Mueller, D.M.  | |||||||||
| History | 
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| Remark 700 | SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS BELOW ... SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 0-STRANDED BARREL THIS IS REPRESENTED BY A 1-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. THE SHEETS PRESENTED AS "EA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. THE SHEETS PRESENTED AS "FA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. | 
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Structure visualization
| Structure viewer | Molecule:  Molmil Jmol/JSmol | 
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Downloads & links
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Download
| PDBx/mmCIF format |  3zry.cif.gz | 744 KB | Display |  PDBx/mmCIF format | 
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| PDB format |  pdb3zry.ent.gz | 606.5 KB | Display |  PDB format | 
| PDBx/mmJSON format |  3zry.json.gz | Tree view |  PDBx/mmJSON format | |
| Others |  Other downloads | 
-Validation report
| Summary document |  3zry_validation.pdf.gz | 1.6 MB | Display |  wwPDB validaton report | 
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| Full document |  3zry_full_validation.pdf.gz | 1.7 MB | Display | |
| Data in XML |  3zry_validation.xml.gz | 148.8 KB | Display | |
| Data in CIF |  3zry_validation.cif.gz | 197.3 KB | Display | |
| Arichive directory |  https://data.pdbj.org/pub/pdb/validation_reports/zr/3zry ftp://data.pdbj.org/pub/pdb/validation_reports/zr/3zry | HTTPS FTP  | 
-Related structure data
| Related structure data | ![]() 2xokS S: Starting model for refinement  | 
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| Similar structure data | 
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Links
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Assembly
| Deposited unit | ![]() 
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| Unit cell | 
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| Noncrystallographic symmetry (NCS) | NCS domain: 
 NCS domain segments: 
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