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Open data
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Basic information
Entry | Database: PDB / ID: 3w0e | ||||||
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Title | Structure of elastase inhibitor AFUEI (crystal form II) | ||||||
![]() | Elastase inhibitor AFUEI | ||||||
![]() | HYDROLASE INHIBITOR / elastase inhibitor / secreted protein | ||||||
Function / homology | ![]() enzyme inhibitor activity / serine-type endopeptidase inhibitor activity / extracellular region Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Imada, K. / Sakuma, M. / Okumura, Y. / Ogawa, K. / Nikai, T. / Homma, M. | ||||||
![]() | ![]() Title: X-ray Structure Analysis and Characterization of AFUEI, an Elastase Inhibitor from Aspergillus fumigatus Authors: Sakuma, M. / Imada, K. / Okumura, Y. / Uchiya, K. / Yamashita, N. / Ogawa, K. / Hijikata, A. / Shirai, T. / Homma, M. / Nikai, T. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 42.2 KB | Display | ![]() |
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PDB format | ![]() | 29.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 430.9 KB | Display | ![]() |
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Full document | ![]() | 432.6 KB | Display | |
Data in XML | ![]() | 9.8 KB | Display | |
Data in CIF | ![]() | 13.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 3w0dSC S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 7531.449 Da / Num. of mol.: 2 / Fragment: Mature AFUEI, UNP residues 20-87 / Source method: isolated from a natural source / Source: (natural) ![]() ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.21 Å3/Da / Density % sol: 44.36 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, sitting drop / pH: 4 Details: 0.8M Sodium Sulfate, 0.1M Sodium acetate, pH 4.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K |
-Data collection
Diffraction | Mean temperature: 90 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: RAYONIX MX225HE / Detector: CCD / Date: Jan 26, 2012 |
Radiation | Monochromator: Double-crystal monochromator / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 1.8→32.22 Å / Num. all: 12564 / Num. obs: 12564 / % possible obs: 99.8 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Redundancy: 9.1 % / Biso Wilson estimate: 22.9 Å2 / Rmerge(I) obs: 0.08 / Net I/σ(I): 17.4 |
Reflection shell | Resolution: 1.8→1.9 Å / Redundancy: 8.9 % / Rmerge(I) obs: 0.401 / Mean I/σ(I) obs: 5.2 / Num. unique all: 1813 / % possible all: 100 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 3W0D Resolution: 1.8→32.219 Å / SU ML: 0.45 / Isotropic thermal model: isotropic / Cross valid method: THROUGHOUT / σ(F): 1.34 / Phase error: 25.56 / Stereochemistry target values: ML / Details: BULK SOLVENT MODEL USED
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Solvent computation | Shrinkage radii: 0.72 Å / VDW probe radii: 1 Å / Solvent model: FLAT BULK SOLVENT MODEL / Bsol: 33.688 Å2 / ksol: 0.353 e/Å3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 26.8 Å2
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Refinement step | Cycle: LAST / Resolution: 1.8→32.219 Å
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Refine LS restraints |
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LS refinement shell | Refine-ID: X-RAY DIFFRACTION / Total num. of bins used: 9
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