- PDB-3ryb: Lactococcal OppA complexed with SLSQSLSQS -
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Basic information
Entry
Database: PDB / ID: 3ryb
Title
Lactococcal OppA complexed with SLSQSLSQS
Components
Oligopeptide
Oligopeptide-binding protein oppA
Keywords
PEPTIDE BINDING PROTEIN / Substrate-binding protein / Peptide binding / Membrane anchored
Function / homology
Function and homology information
peptide transport / peptide transmembrane transporter activity / ATP-binding cassette (ABC) transporter complex / protein transport / outer membrane-bounded periplasmic space Similarity search - Function
Solute-binding protein family 5, conserved site / Bacterial extracellular solute-binding proteins, family 5 signature. / Dipeptide-binding Protein; domain 3 / Dipeptide-binding Protein; Domain 3 / Peptide/nickel binding protein, MppA-type / Solute-binding protein family 5 domain / Solute-binding protein family 5 / Bacterial extracellular solute-binding proteins, family 5 Middle / Prokaryotic membrane lipoprotein lipid attachment site profile. / Roll / Alpha Beta Similarity search - Domain/homology
Resolution: 1.5→30.7 Å / Cor.coef. Fo:Fc: 0.967 / Cor.coef. Fo:Fc free: 0.95 / WRfactor Rfree: 0.1952 / WRfactor Rwork: 0.1571 / Occupancy max: 1 / Occupancy min: 0.37 / FOM work R set: 0.8855 / SU B: 2.595 / SU ML: 0.053 / SU R Cruickshank DPI: 0.0779 / SU Rfree: 0.0819 / Cross valid method: THROUGHOUT / σ(F): 2 / ESU R Free: 0.082 / Stereochemistry target values: MAXIMUM LIKELIHOOD Details: HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT. U VALUES WITH TLS ADDED.
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.2005
4128
5 %
RANDOM
Rwork
0.1626
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obs
0.1645
82542
93.77 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: BABINET MODEL WITH MASK
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