[English] 日本語
Yorodumi- PDB-3qlu: Crystal structure of the GluK2/GluK5 (GluR6/KA2) ATD dimer assembly -
+
Open data
-
Basic information
| Entry | Database: PDB / ID: 3qlu | ||||||
|---|---|---|---|---|---|---|---|
| Title | Crystal structure of the GluK2/GluK5 (GluR6/KA2) ATD dimer assembly | ||||||
Components | (Glutamate receptor, ionotropic kainate ...) x 2 | ||||||
Keywords | MEMBRANE PROTEIN / Glycosylation | ||||||
| Function / homology | Function and homology informationregulation of synaptic vesicle fusion to presynaptic active zone membrane / protein retention in ER lumen / mossy fiber rosette / detection of cold stimulus involved in thermoception / Activation of Na-permeable kainate receptors / kainate selective glutamate receptor complex / Activation of Ca-permeable Kainate Receptor / regulation of short-term neuronal synaptic plasticity / glutamate receptor activity / negative regulation of synaptic transmission, glutamatergic ...regulation of synaptic vesicle fusion to presynaptic active zone membrane / protein retention in ER lumen / mossy fiber rosette / detection of cold stimulus involved in thermoception / Activation of Na-permeable kainate receptors / kainate selective glutamate receptor complex / Activation of Ca-permeable Kainate Receptor / regulation of short-term neuronal synaptic plasticity / glutamate receptor activity / negative regulation of synaptic transmission, glutamatergic / ubiquitin conjugating enzyme binding / regulation of JNK cascade / inhibitory postsynaptic potential / receptor clustering / kainate selective glutamate receptor activity / modulation of excitatory postsynaptic potential / extracellularly glutamate-gated ion channel activity / ionotropic glutamate receptor complex / positive regulation of synaptic transmission / behavioral fear response / neuronal action potential / glutamate-gated receptor activity / glutamate-gated calcium ion channel activity / ligand-gated monoatomic ion channel activity involved in regulation of presynaptic membrane potential / presynaptic modulation of chemical synaptic transmission / dendrite cytoplasm / hippocampal mossy fiber to CA3 synapse / SNARE binding / regulation of membrane potential / excitatory postsynaptic potential / transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential / synaptic transmission, glutamatergic / PDZ domain binding / cellular response to glucose stimulus / establishment of localization in cell / regulation of long-term neuronal synaptic plasticity / postsynaptic density membrane / modulation of chemical synaptic transmission / SH3 domain binding / intracellular calcium ion homeostasis / terminal bouton / positive regulation of neuron apoptotic process / presynaptic membrane / neuron apoptotic process / scaffold protein binding / perikaryon / chemical synaptic transmission / negative regulation of neuron apoptotic process / postsynaptic membrane / postsynaptic density / axon / neuronal cell body / synapse / dendrite / ubiquitin protein ligase binding / glutamatergic synapse / endoplasmic reticulum / identical protein binding / membrane / plasma membrane Similarity search - Function | ||||||
| Biological species | ![]() | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.906 Å | ||||||
Authors | Kumar, J. / Mayer, M.L. | ||||||
Citation | Journal: Neuron / Year: 2011Title: Structure and assembly mechanism for heteromeric kainate receptors. Authors: Kumar, J. / Schuck, P. / Mayer, M.L. | ||||||
| History |
|
-
Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
|---|
-
Downloads & links
-
Download
| PDBx/mmCIF format | 3qlu.cif.gz | 859.3 KB | Display | PDBx/mmCIF format |
|---|---|---|---|---|
| PDB format | pdb3qlu.ent.gz | 730.9 KB | Display | PDB format |
| PDBx/mmJSON format | 3qlu.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 3qlu_validation.pdf.gz | 497.2 KB | Display | wwPDB validaton report |
|---|---|---|---|---|
| Full document | 3qlu_full_validation.pdf.gz | 524.8 KB | Display | |
| Data in XML | 3qlu_validation.xml.gz | 54.7 KB | Display | |
| Data in CIF | 3qlu_validation.cif.gz | 72.9 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ql/3qlu ftp://data.pdbj.org/pub/pdb/validation_reports/ql/3qlu | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 3qltC ![]() 3qlvC ![]() 3h6hS ![]() 3om0S C: citing same article ( S: Starting model for refinement |
|---|---|
| Similar structure data |
-
Links
-
Assembly
| Deposited unit | ![]()
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ![]()
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 2 | ![]()
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Unit cell |
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
|
Movie
Controller
Components
About Yorodumi




X-RAY DIFFRACTION
Citation
















PDBj



