+
Open data
-
Basic information
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 618 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 550.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 15.9 MB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 16.1 MB | Display | |
Data in XML | ![]() | 146.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 1jb0S S: Starting model for refinement |
---|---|
Similar structure data |
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 | ![]()
| ||||||||
Unit cell |
|
-
Components
-Photosystem I ... , 12 types, 12 molecules ABCDEFIJKLMX
#1: Protein | ![]() Mass: 83267.773 Da / Num. of mol.: 1 / Source method: isolated from a natural source Source: (natural) ![]() ![]() Strain: BP-1 / References: UniProt: P0A405 |
---|---|
#2: Protein | ![]() Mass: 82992.453 Da / Num. of mol.: 1 / Source method: isolated from a natural source Source: (natural) ![]() ![]() Strain: BP-1 / References: UniProt: P0A407 |
#3: Protein | ![]() Mass: 8678.011 Da / Num. of mol.: 1 / Source method: isolated from a natural source Source: (natural) ![]() ![]() Strain: BP-1 / References: UniProt: P0A415 |
#4: Protein | ![]() Mass: 15258.297 Da / Num. of mol.: 1 / Source method: isolated from a natural source Source: (natural) ![]() ![]() Strain: BP-1 / References: UniProt: P0A420 |
#5: Protein | ![]() Mass: 8268.290 Da / Num. of mol.: 1 / Source method: isolated from a natural source Source: (natural) ![]() ![]() Strain: BP-1 / References: UniProt: P0A423 |
#6: Protein | ![]() Mass: 17716.586 Da / Num. of mol.: 1 / Source method: isolated from a natural source Source: (natural) ![]() ![]() Strain: BP-1 / References: UniProt: P0A401 |
#7: Protein/peptide | ![]() Mass: 4297.234 Da / Num. of mol.: 1 / Source method: isolated from a natural source Source: (natural) ![]() ![]() Strain: BP-1 / References: UniProt: P0A427 |
#8: Protein/peptide | ![]() Mass: 4770.698 Da / Num. of mol.: 1 / Source method: isolated from a natural source Source: (natural) ![]() ![]() Strain: BP-1 / References: UniProt: P0A429 |
#9: Protein | ![]() Mass: 8483.983 Da / Num. of mol.: 1 / Source method: isolated from a natural source Source: (natural) ![]() ![]() Strain: BP-1 / References: UniProt: P0A425 |
#10: Protein | ![]() Mass: 16156.569 Da / Num. of mol.: 1 / Source method: isolated from a natural source Source: (natural) ![]() ![]() Strain: BP-1 / References: UniProt: Q8DGB4 |
#11: Protein/peptide | ![]() Mass: 3426.115 Da / Num. of mol.: 1 / Source method: isolated from a natural source Source: (natural) ![]() ![]() Strain: BP-1 / References: UniProt: P0A403 |
#12: Protein/peptide | ![]() Mass: 3973.744 Da / Num. of mol.: 1 / Source method: isolated from a natural source Source: (natural) ![]() ![]() Strain: BP-1 / References: UniProt: Q8DKP6 |
-Non-polymers , 8 types, 328 molecules 














#13: Chemical | ChemComp-CLA / ![]() #14: Chemical | ![]() #15: Chemical | ![]() #16: Chemical | ChemComp-BCR / ![]() #17: Chemical | ![]() #18: Chemical | ChemComp-LMG / | #19: Chemical | ChemComp-CA / | #20: Water | ChemComp-HOH / | ![]() |
---|
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal grow![]() | Temperature: 277 K / pH: 6.4 Details: 0.008 M MAGNESIUM SULFATE, 0.005 M MES PH 6.4, 0.02% BETA-DODECYLMALTOSIDE, Batch nanocrystallization, temperature 277K |
---|
-Data collection
Diffraction |
| ||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Diffraction source |
| ||||||||||||||||||||||||||||||||||||||||||||||||
Detector |
| ||||||||||||||||||||||||||||||||||||||||||||||||
Radiation |
| ||||||||||||||||||||||||||||||||||||||||||||||||
Radiation wavelength |
| ||||||||||||||||||||||||||||||||||||||||||||||||
Reflection twin |
| ||||||||||||||||||||||||||||||||||||||||||||||||
Reflection | Resolution: 8.66→243.47 Å / Num. all: 6677 / Num. obs: 6111 / % possible obs: 91.52 % / Observed criterion σ(F): -3 / Observed criterion σ(I): -3 / Redundancy: 738 % / Net I/σ(I): 11.11 | ||||||||||||||||||||||||||||||||||||||||||||||||
Reflection shell |
|
-
Processing
Software |
| |||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method to determine structure![]() ![]() Starting model: PDB entry 1JB0 Resolution: 8.984→81.12 Å / Cor.coef. Fo:Fc: 0.777 / Cor.coef. Fo:Fc free: 0.758 / SU B: 571.44 / SU ML: 3.653 / Cross valid method: THROUGHOUT / σ(F): 0 / ESU R Free: 0.973 / Stereochemistry target values: Engh & Huber / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
| |||||||||||||||||||||||||
Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | |||||||||||||||||||||||||
Displacement parameters | Biso mean: 46.257 Å2
| |||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 8.984→81.12 Å
| |||||||||||||||||||||||||
LS refinement shell | Resolution: 8.984→9.217 Å / Total num. of bins used: 20
|