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- PDB-1c51: PHOTOSYNTHETIC REACTION CENTER AND CORE ANTENNA SYSTEM (TRIMERIC)... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1c51 | |||||||||
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Title | PHOTOSYNTHETIC REACTION CENTER AND CORE ANTENNA SYSTEM (TRIMERIC), ALPHA CARBON ONLY | |||||||||
![]() | (PROTEIN (PHOTOSYSTEM I: SUBUNIT ...) x 8 | |||||||||
![]() | PHOTOSYNTHESIS/ELECTRON TRANSPORT / PHOTOSYNTHESIS / PHOTOSYNTHETIC REACTION CENTER / OXYGENIC PHOTOSYNTHESIS / CORE- ANTENNA LIGHT-HARVESTING SYSTEM / THERMOPHILIC CYANOBACTERIUM / HELIX-BUNDLE MEMBRANE PROTEIN / PHOTOSYNTHESIS-ELECTRON TRANSPORT COMPLEX | |||||||||
Function / homology | CHLOROPHYLL A / PHYLLOQUINONE / IRON/SULFUR CLUSTER![]() | |||||||||
Biological species | ![]() | |||||||||
Method | ![]() ![]() ![]() | |||||||||
![]() | Klukas, O. / Schubert, W.D. / Jordan, P. / Krauss, N. / Fromme, P. / Witt, H.T. / Saenger, W. | |||||||||
![]() | ![]() Title: Photosystem I, an improved model of the stromal subunits PsaC, PsaD, and PsaE. Authors: Klukas, O. / Schubert, W.D. / Jordan, P. / Krauss, N. / Fromme, P. / Witt, H.T. / Saenger, W. #1: ![]() Title: Localisation of Two Phylloquinones, Qk and Qk', in an Improved Electron Density Map of Photosystem I at 4-A Resolution Authors: Klukas, O. / Schubert, W.-D. / Jordan, P. / Krauss, N. / Fromme, P. / Witt, H.T. / Saenger, W. #2: ![]() Title: Photosystem I of Synechococcus Elongatus at 4 A Resolution: Comprehensive Structure Analysis Authors: Schubert, W.-D. / Klukas, O. / Krauss, N. / Saenger, W. / Fromme, P. / Witt, H.T. #3: ![]() Title: Photosystem I at 4 A Resolution Represents the First Structural Model of a Joint Photosynthetic Reaction Centre and Core Antenna System Authors: Krauss, N. / Schubert, W.-D. / Klukas, O. / Fromme, P. / Witt, H.T. / Saenger, W. #4: ![]() Title: Three-Dimensional Structure of System I of Photosynthesis at 6A Resolution Authors: Krauss, N. / Hinrichs, W. / Witt, I. / Fromme, P. / Pritzkow, W. / Dauter, Z. / Betzel, C. / Wilson, K.S. / Witt, H.T. / Saenger, W. #5: ![]() Title: X-Ray Characterization of Single Crystals of the Reaction Center I of Water Splitting Photosynthesis Authors: Witt, I. / Witt, H.T. / Di Fiore, D. / Rogner, M. / Hinrichs, W. / Saenger, W. / Granzin, J. / Betzel, C. / Dauter, Z. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 120.6 KB | Display | ![]() |
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PDB format | ![]() | 81.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 3.9 MB | Display | ![]() |
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Full document | ![]() | 4 MB | Display | |
Data in XML | ![]() | 10.9 KB | Display | |
Data in CIF | ![]() | 30.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components
-PROTEIN (PHOTOSYSTEM I: SUBUNIT ... , 8 types, 8 molecules ABCDEFKL
#1: Protein | Mass: 50825.766 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() |
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#2: Protein | Mass: 52698.094 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() |
#3: Protein | Mass: 6571.091 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() |
#4: Protein | Mass: 10656.127 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() |
#5: Protein | Mass: 6400.881 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() |
#6: Protein | Mass: 13039.064 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() |
#7: Protein | Mass: 6656.196 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() |
#8: Protein | Mass: 10230.603 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() |
-Non-polymers , 3 types, 77 molecules ![](data/chem/img/CLA.gif)
![](data/chem/img/PQN.gif)
![](data/chem/img/SF4.gif)
![](data/chem/img/PQN.gif)
![](data/chem/img/SF4.gif)
#9: Chemical | ChemComp-CLA / #10: Chemical | #11: Chemical | |
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-Details
Compound details | CHAIN A COMPRISES ONE OF THE TWO LARGE, CENTRAL, MEMBRANE INTEGRAL SUBUNITS OF THE REACTION CENTER ...CHAIN A COMPRISES ONE OF THE TWO LARGE, CENTRAL, MEMBRANE INTEGRAL SUBUNITS OF THE REACTION CENTER OF PSI - EITHER PSAA OR PSAB. CHAIN B COMPRISES THE SECOND OF THE TWO LARGE, CENTRAL, MEMBRANE INTEGRAL SUBUNITS OF THE REACTION CENTER OF PSI - EITHER PSAB OR PSAA. CHAIN C COMPRISES THE MODEL OF THE STROMAL EXTRINSIC SUBUNIT OF PSI - PSAC. CHAIN F COMPRISES THOSE SECTIONS OF THE PRESENT MODEL LOCATED DISTAL TO THE TRIMERIZAT |
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Nonpolymer details | THE ATOM NAMING OF THE CHLOROPHYLL MOLECULES IS ARBITRARY IN THE SENSE THAT THE AUTHORS DO NOT WISH ...THE ATOM NAMING OF THE CHLOROPHYL |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 5.8 Å3/Da / Density % sol: 80 % Description: DATA WERE COLLECTED AT DIFFERENT SYNCHROTRONS, SEE FIELD 'BEAMLINE' | ||||||||||||||||||
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Crystal grow | pH: 6.4 / Details: pH 6.4 | ||||||||||||||||||
Crystal grow | *PLUS Method: batch methodDetails: Fromme, P., (1998) Biochim. Biophys. Acta, 1365, 175. | ||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 277 K |
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Diffraction source | Source: ![]() ![]() |
Detector | Type: MAR scanner 300 mm plate / Detector: IMAGE PLATE / Date: Jul 1, 1996 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9 Å / Relative weight: 1 |
Reflection | Resolution: 3.5→60 Å / Num. obs: 89999 / % possible obs: 93.4 % / Observed criterion σ(I): -3 / Redundancy: 4.8 % / Rmerge(I) obs: 0.107 / Net I/σ(I): 11.2 |
Reflection shell | Resolution: 3.5→3.56 Å / Redundancy: 2.1 % / Rmerge(I) obs: 0.243 / Mean I/σ(I) obs: 4.2 / % possible all: 78.9 |
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Processing
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Refinement | Method to determine structure: ![]() | ||||||||||||
Refinement step | Cycle: LAST / Resolution: 4→60 Å
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Refinement | *PLUS Highest resolution: 4 Å / Lowest resolution: 60 Å | ||||||||||||
Solvent computation | *PLUS | ||||||||||||
Displacement parameters | *PLUS |