regulation of cellular biosynthetic process / negative regulation of growth rate / regulation of primary metabolic process / acetyltransferase activator activity / negative regulation of catalytic activity / negative regulation of fatty acid biosynthetic process / response to host immune response / positive regulation of catalytic activity / positive regulation of DNA binding / peptidoglycan biosynthetic process ...regulation of cellular biosynthetic process / negative regulation of growth rate / regulation of primary metabolic process / acetyltransferase activator activity / negative regulation of catalytic activity / negative regulation of fatty acid biosynthetic process / response to host immune response / positive regulation of catalytic activity / positive regulation of DNA binding / peptidoglycan biosynthetic process / peptidoglycan-based cell wall / negative regulation of protein binding / manganese ion binding / regulation of cell shape / protein autophosphorylation / non-specific serine/threonine protein kinase / protein kinase activity / phosphorylation / protein phosphorylation / protein serine kinase activity / protein serine/threonine kinase activity / ATP binding / identical protein binding / plasma membrane Similarity search - Function
PASTA domain / PASTA domain / PASTA domain profile. / PASTA / Transferase(Phosphotransferase) domain 1 / Transferase(Phosphotransferase); domain 1 / Phosphorylase Kinase; domain 1 / Phosphorylase Kinase; domain 1 / Serine/threonine-protein kinase, active site / Serine/Threonine protein kinases active-site signature. ...PASTA domain / PASTA domain / PASTA domain profile. / PASTA / Transferase(Phosphotransferase) domain 1 / Transferase(Phosphotransferase); domain 1 / Phosphorylase Kinase; domain 1 / Phosphorylase Kinase; domain 1 / Serine/threonine-protein kinase, active site / Serine/Threonine protein kinases active-site signature. / Protein kinase domain / Serine/Threonine protein kinases, catalytic domain / Protein kinase, ATP binding site / Protein kinases ATP-binding region signature. / Protein kinase domain profile. / Protein kinase domain / Protein kinase-like domain superfamily / 2-Layer Sandwich / Orthogonal Bundle / Mainly Alpha / Alpha Beta Similarity search - Domain/homology
Resolution: 1.9→17.46 Å / Cor.coef. Fo:Fc: 0.949 / Cor.coef. Fo:Fc free: 0.929 / SU B: 5.554 / SU ML: 0.106 / Cross valid method: THROUGHOUT / ESU R Free: 0.145 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.22758
1161
5.1 %
RANDOM
Rwork
0.19296
-
-
-
obs
0.19474
21540
98.4 %
-
Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: BABINET MODEL WITH MASK
Displacement parameters
Biso mean: 27.779 Å2
Baniso -1
Baniso -2
Baniso -3
1-
-0.12 Å2
0 Å2
0 Å2
2-
-
0.18 Å2
0 Å2
3-
-
-
-0.06 Å2
Refinement step
Cycle: LAST / Resolution: 1.9→17.46 Å
Protein
Nucleic acid
Ligand
Solvent
Total
Num. atoms
2048
0
44
205
2297
Refine LS restraints
Refine-ID
Type
Dev ideal
Dev ideal target
Number
X-RAY DIFFRACTION
r_bond_refined_d
0.008
0.022
2148
X-RAY DIFFRACTION
r_bond_other_d
0.001
0.02
1979
X-RAY DIFFRACTION
r_angle_refined_deg
1.518
1.989
2936
X-RAY DIFFRACTION
r_angle_other_deg
0.744
3.001
4558
X-RAY DIFFRACTION
r_dihedral_angle_1_deg
5.046
5
272
X-RAY DIFFRACTION
r_dihedral_angle_2_deg
33.988
22.935
92
X-RAY DIFFRACTION
r_dihedral_angle_3_deg
13.28
15
320
X-RAY DIFFRACTION
r_dihedral_angle_4_deg
12.875
15
20
X-RAY DIFFRACTION
r_chiral_restr
0.123
0.2
334
X-RAY DIFFRACTION
r_gen_planes_refined
0.003
0.02
2407
X-RAY DIFFRACTION
r_gen_planes_other
0.001
0.02
422
X-RAY DIFFRACTION
r_nbd_refined
0.203
0.2
417
X-RAY DIFFRACTION
r_nbd_other
0.167
0.2
1950
X-RAY DIFFRACTION
r_nbtor_refined
0.171
0.2
1058
X-RAY DIFFRACTION
r_nbtor_other
0.08
0.2
1253
X-RAY DIFFRACTION
r_xyhbond_nbd_refined
0.184
0.2
161
X-RAY DIFFRACTION
r_xyhbond_nbd_other
X-RAY DIFFRACTION
r_metal_ion_refined
X-RAY DIFFRACTION
r_metal_ion_other
X-RAY DIFFRACTION
r_symmetry_vdw_refined
0.128
0.2
8
X-RAY DIFFRACTION
r_symmetry_vdw_other
0.191
0.2
35
X-RAY DIFFRACTION
r_symmetry_hbond_refined
0.168
0.2
13
X-RAY DIFFRACTION
r_symmetry_hbond_other
X-RAY DIFFRACTION
r_symmetry_metal_ion_refined
X-RAY DIFFRACTION
r_symmetry_metal_ion_other
X-RAY DIFFRACTION
r_mcbond_it
0.71
1.5
1757
X-RAY DIFFRACTION
r_mcbond_other
0.101
1.5
547
X-RAY DIFFRACTION
r_mcangle_it
0.804
2
2197
X-RAY DIFFRACTION
r_scbond_it
1.415
3
882
X-RAY DIFFRACTION
r_scangle_it
2.056
4.5
739
X-RAY DIFFRACTION
r_rigid_bond_restr
X-RAY DIFFRACTION
r_sphericity_free
X-RAY DIFFRACTION
r_sphericity_bonded
LS refinement shell
Resolution: 1.9→1.949 Å / Total num. of bins used: 20
Rfactor
Num. reflection
% reflection
Rfree
0.308
67
-
Rwork
0.247
1434
-
obs
-
-
91.41 %
Refinement TLS params.
Method: refined / Refine-ID: X-RAY DIFFRACTION
ID
L11 (°2)
L12 (°2)
L13 (°2)
L22 (°2)
L23 (°2)
L33 (°2)
S11 (Å °)
S12 (Å °)
S13 (Å °)
S21 (Å °)
S22 (Å °)
S23 (Å °)
S31 (Å °)
S32 (Å °)
S33 (Å °)
T11 (Å2)
T12 (Å2)
T13 (Å2)
T22 (Å2)
T23 (Å2)
T33 (Å2)
Origin x (Å)
Origin y (Å)
Origin z (Å)
1
0.9546
0.4188
-1.0138
6.6997
-2.1109
1.7953
-0.1141
0.0786
-0.3498
-0.2609
-0.1375
-0.0771
0.1587
-0.04
0.2515
-0.0419
-0.0306
0.0446
-0.1301
-0.0053
0.0528
41.4584
26.1618
7.2414
2
5.608
-1.4501
-1.6001
2.7064
0.6768
2.9244
-0.2821
-0.2154
-0.5574
-0.2206
0.1998
-0.1496
0.2738
0.3357
0.0822
-0.0325
0.0384
0.059
-0.0951
0.0831
-0.0011
45.0433
28.5865
13.0883
3
41.6094
54.1779
-40.5825
70.5428
-52.8408
39.5809
-1.6304
0.3155
-0.2347
-1.8653
0.1448
-3.9334
2.049
0.4876
1.4857
0.1847
0.118
0.1495
0.0607
-0.1261
0.1159
52.1341
37.3022
-4.3586
4
5.3236
0.2044
-1.7556
1.6622
0.165
2.3259
-0.141
-0.5234
-0.3349
-0.0907
-0.0774
0.0532
0.0665
0.2608
0.2184
-0.0695
-0.0043
-0.001
-0.0456
0.0716
-0.0838
30.6784
38.7992
21.0951
5
3.5886
0.9405
-1.6212
1.7543
-0.6834
1.9353
0.3768
-0.5605
0.3955
0.1831
-0.2117
0.1953
-0.3416
0.3037
-0.1651
-0.029
-0.124
0.049
-0.0342
-0.0896
-0.0661
28.0575
52.4884
25.2206
Refinement TLS group
ID
Refine-ID
Refine TLS-ID
Auth asym-ID
Auth seq-ID
1
X-RAY DIFFRACTION
1
A
9 - 47
2
X-RAY DIFFRACTION
2
A
67 - 96
3
X-RAY DIFFRACTION
3
A
48
4
X-RAY DIFFRACTION
4
A
97 - 155
5
X-RAY DIFFRACTION
5
A
195 - 285
+
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