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- PDB-3oaa: Structure of the E.coli F1-ATP synthase inhibited by subunit Epsilon -

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基本情報

登録情報
データベース: PDB / ID: 3oaa
タイトルStructure of the E.coli F1-ATP synthase inhibited by subunit Epsilon
要素(ATP synthase ...) x 4
キーワードHydrolase/Transport protein / Rossmann Fold / Hydrolase / Synthase / Hydrolase-Transport protein complex
機能・相同性
機能・相同性情報


proton-transporting ATP synthase complex / proton motive force-driven plasma membrane ATP synthesis / proton motive force-driven ATP synthesis / proton-transporting ATP synthase complex, catalytic core F(1) / H+-transporting two-sector ATPase / proton-transporting ATPase activity, rotational mechanism / proton-transporting ATP synthase activity, rotational mechanism / ADP binding / ATP hydrolysis activity / ATP binding ...proton-transporting ATP synthase complex / proton motive force-driven plasma membrane ATP synthesis / proton motive force-driven ATP synthesis / proton-transporting ATP synthase complex, catalytic core F(1) / H+-transporting two-sector ATPase / proton-transporting ATPase activity, rotational mechanism / proton-transporting ATP synthase activity, rotational mechanism / ADP binding / ATP hydrolysis activity / ATP binding / membrane / plasma membrane
類似検索 - 分子機能
ATP synthase delta/epsilon subunit, C-terminal domain / ATP Synthase; domain 1 / F0F1 ATP synthase delta/epsilon subunit, N-terminal / ATP synthase, F1 complex, gamma subunit / ATP synthase delta/epsilon subunit, C-terminal domain / ATP synthase, Delta/Epsilon chain, long alpha-helix domain / ATP synthase alpha/beta chain, C-terminal domain / Lysin / Thrombin, subunit H - #170 / Elongation Factor Tu (Ef-tu); domain 3 - #20 ...ATP synthase delta/epsilon subunit, C-terminal domain / ATP Synthase; domain 1 / F0F1 ATP synthase delta/epsilon subunit, N-terminal / ATP synthase, F1 complex, gamma subunit / ATP synthase delta/epsilon subunit, C-terminal domain / ATP synthase, Delta/Epsilon chain, long alpha-helix domain / ATP synthase alpha/beta chain, C-terminal domain / Lysin / Thrombin, subunit H - #170 / Elongation Factor Tu (Ef-tu); domain 3 - #20 / Pyruvate Kinase; Chain: A, domain 1 / Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 / Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 / ATP synthase, gamma subunit, helix hairpin domain / ATP synthase delta/epsilon subunit, C-terminal domain superfamily / ATP synthase, F1 complex, delta/epsilon subunit / ATP synthase, F1 complex, delta/epsilon subunit, N-terminal / F0F1 ATP synthase delta/epsilon subunit, N-terminal / ATP synthase, Delta/Epsilon chain, beta-sandwich domain / ATP synthase, F1 complex, gamma subunit conserved site / ATP synthase gamma subunit signature. / ATP synthase, F1 complex, beta subunit / ATP synthase, alpha subunit, C-terminal domain superfamily / ATP synthase, F1 complex, gamma subunit / ATP synthase, F1 complex, gamma subunit superfamily / ATP synthase / ATP synthase, alpha subunit, C-terminal / ATP synthase, F1 complex, alpha subunit / ATP synthase, F1 complex, alpha subunit nucleotide-binding domain / ATP synthase alpha/beta chain, C terminal domain / ATPase, F1/V1 complex, beta/alpha subunit, C-terminal / ATP synthase subunit alpha, N-terminal domain-like superfamily / ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily / ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain / ATP synthase alpha/beta family, beta-barrel domain / ATPase, alpha/beta subunit, nucleotide-binding domain, active site / ATP synthase alpha and beta subunits signature. / Elongation Factor Tu (Ef-tu); domain 3 / ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain / ATP synthase alpha/beta family, nucleotide-binding domain / Single alpha-helices involved in coiled-coils or other helix-helix interfaces / Helix Hairpins / Thrombin, subunit H / P-loop containing nucleotide triphosphate hydrolases / ATPases associated with a variety of cellular activities / AAA+ ATPase domain / Up-down Bundle / Beta Barrel / Sandwich / P-loop containing nucleoside triphosphate hydrolase / Rossmann fold / Orthogonal Bundle / 3-Layer(aba) Sandwich / Mainly Beta / Mainly Alpha / Alpha Beta
類似検索 - ドメイン・相同性
ADENOSINE-5'-DIPHOSPHATE / PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER / : / : / : / : / ATP synthase epsilon chain / ATP synthase gamma chain / ATP synthase subunit alpha / ATP synthase subunit beta
類似検索 - 構成要素
生物種Escherichia coli DH1 (大腸菌)
手法X線回折 / シンクロトロン / 分子置換 / 解像度: 3.26 Å
データ登録者Cingolani, G. / Duncan, T.M.
引用ジャーナル: To be Published
タイトル: Structural basis for inhibition of bacterial ATP synthase by subunit epsilon of the rotor stalk
著者: Cingolani, G. / Duncan, T.M.
履歴
登録2010年8月5日登録サイト: RCSB / 処理サイト: RCSB
改定 1.02011年5月25日Provider: repository / タイプ: Initial release
改定 1.12011年7月13日Group: Version format compliance
改定 1.22023年9月6日Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Refinement description
カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / pdbx_struct_conn_angle / struct_conn / struct_ref_seq_dif / struct_site
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_conn_angle.ptnr1_auth_asym_id / _pdbx_struct_conn_angle.ptnr1_auth_comp_id / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_asym_id / _pdbx_struct_conn_angle.ptnr1_label_atom_id / _pdbx_struct_conn_angle.ptnr1_label_comp_id / _pdbx_struct_conn_angle.ptnr1_label_seq_id / _pdbx_struct_conn_angle.ptnr2_auth_asym_id / _pdbx_struct_conn_angle.ptnr2_label_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_comp_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_label_asym_id / _pdbx_struct_conn_angle.ptnr3_label_atom_id / _pdbx_struct_conn_angle.ptnr3_label_comp_id / _pdbx_struct_conn_angle.ptnr3_label_seq_id / _pdbx_struct_conn_angle.value / _struct_conn.pdbx_dist_value / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_ref_seq_dif.details / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id

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構造の表示

構造ビューア分子:
MolmilJmol/JSmol

ダウンロードとリンク

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集合体

登録構造単位
A: ATP synthase subunit alpha
B: ATP synthase subunit alpha
C: ATP synthase subunit alpha
D: ATP synthase subunit beta
E: ATP synthase subunit beta
F: ATP synthase subunit beta
G: ATP synthase gamma chain
H: ATP synthase epsilon chain
I: ATP synthase subunit alpha
J: ATP synthase subunit alpha
K: ATP synthase subunit alpha
L: ATP synthase subunit beta
M: ATP synthase subunit beta
N: ATP synthase subunit beta
O: ATP synthase gamma chain
P: ATP synthase epsilon chain
Q: ATP synthase subunit alpha
R: ATP synthase subunit alpha
S: ATP synthase subunit alpha
T: ATP synthase subunit beta
U: ATP synthase subunit beta
V: ATP synthase subunit beta
W: ATP synthase gamma chain
X: ATP synthase epsilon chain
Y: ATP synthase subunit alpha
Z: ATP synthase subunit alpha
a: ATP synthase subunit alpha
b: ATP synthase subunit beta
c: ATP synthase subunit beta
d: ATP synthase subunit beta
e: ATP synthase gamma chain
f: ATP synthase epsilon chain
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)1,461,92081
ポリマ－1,452,11532
非ポリマー9,80549
水1,15364
1
A: ATP synthase subunit alpha
B: ATP synthase subunit alpha
C: ATP synthase subunit alpha
D: ATP synthase subunit beta
E: ATP synthase subunit beta
F: ATP synthase subunit beta
G: ATP synthase gamma chain
H: ATP synthase epsilon chain
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)365,55221
ポリマ－363,0298
非ポリマー2,52313
水1448
タイプ名称対称操作数
identity operation1_555x,y,z1
2
I: ATP synthase subunit alpha
J: ATP synthase subunit alpha
K: ATP synthase subunit alpha
L: ATP synthase subunit beta
M: ATP synthase subunit beta
N: ATP synthase subunit beta
O: ATP synthase gamma chain
P: ATP synthase epsilon chain
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)365,55221
ポリマ－363,0298
非ポリマー2,52313
水905
タイプ名称対称操作数
identity operation1_555x,y,z1
3
Q: ATP synthase subunit alpha
R: ATP synthase subunit alpha
S: ATP synthase subunit alpha
T: ATP synthase subunit beta
U: ATP synthase subunit beta
V: ATP synthase subunit beta
W: ATP synthase gamma chain
X: ATP synthase epsilon chain
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)365,45620
ポリマ－363,0298
非ポリマー2,42712
水905
タイプ名称対称操作数
identity operation1_555x,y,z1
4
Y: ATP synthase subunit alpha
Z: ATP synthase subunit alpha
a: ATP synthase subunit alpha
b: ATP synthase subunit beta
c: ATP synthase subunit beta
d: ATP synthase subunit beta
e: ATP synthase gamma chain
f: ATP synthase epsilon chain
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)365,36019
ポリマ－363,0298
非ポリマー2,33111
水543
タイプ名称対称操作数
identity operation1_555x,y,z1
単位格子
Length a, b, c (Å)435.970, 183.000, 225.390
Angle α, β, γ (deg.)90.00, 108.99, 90.00
Int Tables number5
Space group name H-MC121
非結晶学的対称性 (NCS)NCSドメイン:
IDEns-ID
11
21
31
41
12
22
32
42
13
23
33
43
14
24
34
44
15
25
35
45
16
26
36
46
17
27
37
47
18
28
38
48
19
29
39
49
110
210
310
410
111
211
311
411
112
212
312
412

NCSドメイン領域:
Dom-IDComponent-IDEns-IDSelection details
111chain A resid 24:511
211chain I and resid 24:511
311chain Q and resid 24:511
411chain Y and resid 24:511
112chain A resid 600:601
212chain I and resid 600:601
312chain Q and resid 600:601
412chain Y and resid 600:601
113chain B resid 26:511
213chain J and resid 26:511
313chain R and resid 26:511
413chain Z and resid 26:511
114chain B resid 600:601
214chain J and resid 600:601
314chain R and resid 600:601
414chain Z and resid 600:601
115chain C resid 25:511
215chain K and resid 25:511
315chain S and resid 25:511
415chain a and resid 25:511
116chain C resid 600:601
216chain K and resid 600:601
316chain S and resid 600:601
416chain a and resid 600:601
117chain D resid 2:259
217chain L and resid 2:259
317chain T and resid 2:259
417chain b and resid 2:259
118chain D resid 600:601
218chain L and resid 600:601
318chain T and resid 600:601
418chain b and resid 600:601
119chain E resid 2:259
219chain M and resid 2:259
319chain U and resid 2:259
419chain c and resid 2:259
1110chain F resid 2:259
2110chain N and resid 2:259
3110chain V and resid 2:259
4110chain d and resid 2:259
1111chain G resid 1:284
2111chain O and resid 1:284
3111chain W and resid 1:284
4111chain e and resid 1:284
1112chain H resid 1:138
2112chain P and resid 1:138
3112chain X and resid 1:138
4112chain f and resid 1:138

NCSアンサンブル:
ID
1
2
3
4
5
6
7
8
9
10
11
12

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要素

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ATP synthase ... , 4種, 32分子 ABCIJKQRSYZaDEFLMNTUVbcdGOWeHPXf

#1: タンパク質
ATP synthase subunit alpha


分子量: 55281.871 Da / 分子数: 12 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli DH1 (大腸菌) / 株: ATCC 33849 / DSM 4235 / NCIB 12045 / K12 / DH1 / 遺伝子: atpA, EcDH1_4233 / 発現宿主: Escherichia coli (大腸菌)
参照: UniProt: C9QXA2, UniProt: P0ABB0*PLUS, H+-transporting two-sector ATPase
#2: タンパク質
ATP synthase subunit beta


分子量: 50246.934 Da / 分子数: 12 / Mutation: K82E / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli DH1 (大腸菌) / 株: ATCC 33849 / DSM 4235 / NCIB 12045 / K12 / DH1 / 遺伝子: atpD, EcDH1_4235 / 発現宿主: Escherichia coli (大腸菌)
参照: UniProt: C9QXA4, UniProt: P0ABB4*PLUS, H+-transporting two-sector ATPase
#3: タンパク質
ATP synthase gamma chain


分子量: 31486.246 Da / 分子数: 4 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli DH1 (大腸菌) / 株: ATCC 33849 / DSM 4235 / NCIB 12045 / K12 / DH1 / 遺伝子: EcDH1_4234 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C9QXA3, UniProt: P0ABA6*PLUS
#4: タンパク質
ATP synthase epsilon chain


分子量: 14956.047 Da / 分子数: 4 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli DH1 (大腸菌) / 株: ATCC 33849 / DSM 4235 / NCIB 12045 / K12 / DH1 / 遺伝子: atpC, EcDH1_4236 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C9QXA5, UniProt: P0A6E6*PLUS

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非ポリマー , 5種, 113分子

#5: 化合物
ChemComp-ANP / PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER / AMP-PNP


分子量: 506.196 Da / 分子数: 12 / 由来タイプ: 合成 / 式: C10H17N6O12P3
コメント: AMP-PNP, エネルギー貯蔵分子類似体*YM
#6: 化合物
ChemComp-MG / MAGNESIUM ION / マグネシウムジカチオン


分子量: 24.305 Da / 分子数: 16 / 由来タイプ: 合成 / 式: Mg
#7: 化合物
ChemComp-ADP / ADENOSINE-5'-DIPHOSPHATE / ADP


分子量: 427.201 Da / 分子数: 4 / 由来タイプ: 合成 / 式: C10H15N5O10P2 / コメント: ADP, エネルギー貯蔵分子*YM
#8: 化合物
ChemComp-SO4 / SULFATE ION / 硫酸ジアニオン


分子量: 96.063 Da / 分子数: 17 / 由来タイプ: 合成 / 式: SO4
#9: 水 ChemComp-HOH / water


分子量: 18.015 Da / 分子数: 64 / 由来タイプ: 天然 / 式: H2O

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実験情報

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実験

実験手法: X線回折 / 使用した結晶の数: 1

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試料調製

結晶マシュー密度: 2.93 Å3/Da / 溶媒含有率: 57.98 %
結晶化温度: 298 K / 手法: 蒸気拡散法, ハンギングドロップ法 / pH: 7
詳細: 0.1 M MOPS-NaOH, 75-150 mM MgSO4, 7-9% PEG8000, 5 mM beta-mercaptoethanol, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K

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データ収集

回折
ID平均測定温度 (K)Crystal-ID
11001
21
31
放射光源
由来サイトビームラインID
シンクロトロンNSLS X251
シンクロトロンNSLS X6A2
シンクロトロンCHESS F13
検出器
タイプID検出器日付
ADSC QUANTUM 315r1CCD2008年10月10日
2
3
放射
IDプロトコル単色(M)・ラウエ(L)散乱光タイプWavelength-ID
1SINGLE WAVELENGTHMx-ray1
2x-ray1
3x-ray1
放射波長相対比: 1
反射解像度: 3.26→15 Å / Num. all: 252390 / Num. obs: 252390 / % possible obs: 98.5 % / Observed criterion σ(F): 1 / Observed criterion σ(I): 1 / 冗長度: 2.5 % / Biso Wilson estimate: 79.38 Å2 / Rmerge(I) obs: 0.092 / Rsym value: 0.092 / Net I/σ(I): 15.44
反射 シェル解像度: 3.26→3.36 Å / 冗長度: 2.5 % / Rmerge(I) obs: 0.626 / Mean I/σ(I) obs: 1.5 / Rsym value: 0.626 / % possible all: 91.7

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解析

ソフトウェア
名称バージョン分類NB
PHENIX1.6.3_473精密化
PDB_EXTRACT3.1データ抽出
HKL-2000データ収集
HKL-2000データ削減
HKL-2000データスケーリング
PHASER位相決定
精密化構造決定の手法: 分子置換
開始モデル: PDB entry 2CK3

2ck3


解像度: 3.26→15 Å / Occupancy max: 1 / Occupancy min: 1 / SU ML: 0.47 / σ(F): 1.33 / 立体化学のターゲット値: ML
Rfactor反射数%反射
Rfree0.265 2000 79 %
Rwork0.243 --
obs0.243 252275 98 %
溶媒の処理減衰半径: 0.83 Å / VDWプローブ半径: 1.1 Å / 溶媒モデル: FLAT BULK SOLVENT MODEL / Bsol: 37.47 Å2 / ksol: 0.26 e/Å3
原子変位パラメータBiso mean: 118.36 Å2
Baniso -1Baniso -2Baniso -3
1--4.2964 Å2-0 Å21.4846 Å2
2---5.4824 Å2-0 Å2
3----2.6016 Å2
精密化ステップサイクル: LAST / 解像度: 3.26→15 Å
タンパク質核酸リガンド溶媒全体
原子数98928 0 581 64 99573
拘束条件
Refine-IDタイプDev ideal数
X-RAY DIFFRACTIONf_bond_d0.004101060
X-RAY DIFFRACTIONf_angle_d0.821136804
X-RAY DIFFRACTIONf_dihedral_angle_d22.88864092
X-RAY DIFFRACTIONf_chiral_restr0.05815664
X-RAY DIFFRACTIONf_plane_restr0.00317872
Refine LS restraints NCS
Ens-IDDom-IDAuth asym-ID数Refine-IDタイプRms dev position (Å)
11A3667X-RAY DIFFRACTIONPOSITIONAL
12I3667X-RAY DIFFRACTIONPOSITIONAL
13Q3667X-RAY DIFFRACTIONPOSITIONAL
14Y3667X-RAY DIFFRACTIONPOSITIONAL
21A32X-RAY DIFFRACTIONPOSITIONAL
22I32X-RAY DIFFRACTIONPOSITIONAL0.006
23Q32X-RAY DIFFRACTIONPOSITIONAL0.008
24Y32X-RAY DIFFRACTIONPOSITIONAL0.007
31B3627X-RAY DIFFRACTIONPOSITIONAL
32J3627X-RAY DIFFRACTIONPOSITIONAL
33R3627X-RAY DIFFRACTIONPOSITIONAL
34Z3627X-RAY DIFFRACTIONPOSITIONAL
41B32X-RAY DIFFRACTIONPOSITIONAL
42J32X-RAY DIFFRACTIONPOSITIONAL0.006
43R32X-RAY DIFFRACTIONPOSITIONAL0.007
44Z32X-RAY DIFFRACTIONPOSITIONAL0.006
51C3646X-RAY DIFFRACTIONPOSITIONAL
52K3646X-RAY DIFFRACTIONPOSITIONAL
53S3646X-RAY DIFFRACTIONPOSITIONAL
54A3646X-RAY DIFFRACTIONPOSITIONAL
61C32X-RAY DIFFRACTIONPOSITIONAL
62K32X-RAY DIFFRACTIONPOSITIONAL0.006
63S32X-RAY DIFFRACTIONPOSITIONAL0.008
64A32X-RAY DIFFRACTIONPOSITIONAL0.008
71D1970X-RAY DIFFRACTIONPOSITIONAL
72L1970X-RAY DIFFRACTIONPOSITIONAL
73T1970X-RAY DIFFRACTIONPOSITIONAL
74B1970X-RAY DIFFRACTIONPOSITIONAL
81D28X-RAY DIFFRACTIONPOSITIONAL
82L28X-RAY DIFFRACTIONPOSITIONAL0.008
83T28X-RAY DIFFRACTIONPOSITIONAL0.008
84B28X-RAY DIFFRACTIONPOSITIONAL0.006
91E1970X-RAY DIFFRACTIONPOSITIONAL
92M1970X-RAY DIFFRACTIONPOSITIONAL
93U1970X-RAY DIFFRACTIONPOSITIONAL
94C1970X-RAY DIFFRACTIONPOSITIONAL
101F1970X-RAY DIFFRACTIONPOSITIONAL
102N1970X-RAY DIFFRACTIONPOSITIONAL
103V1970X-RAY DIFFRACTIONPOSITIONAL
104D1970X-RAY DIFFRACTIONPOSITIONAL
111G2182X-RAY DIFFRACTIONPOSITIONAL
112O2182X-RAY DIFFRACTIONPOSITIONAL0.001
113W2182X-RAY DIFFRACTIONPOSITIONAL0.001
114E2182X-RAY DIFFRACTIONPOSITIONAL0.001
121H1047X-RAY DIFFRACTIONPOSITIONAL
122P1047X-RAY DIFFRACTIONPOSITIONAL0.001
123X1047X-RAY DIFFRACTIONPOSITIONAL0.001
124F1047X-RAY DIFFRACTIONPOSITIONAL0.001
LS精密化 シェル
解像度 (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkRefine-ID% reflection obs (%)
3.26-3.34140.40511200.385515013X-RAY DIFFRACTION83
3.3414-3.43070.34021430.363717989X-RAY DIFFRACTION99
3.4307-3.53030.37631450.34118097X-RAY DIFFRACTION99
3.5303-3.64270.32631450.324718091X-RAY DIFFRACTION100
3.6427-3.77090.32461440.306918063X-RAY DIFFRACTION100
3.7709-3.91930.31171440.282618112X-RAY DIFFRACTION100
3.9193-4.09420.30591460.260918158X-RAY DIFFRACTION100
4.0942-4.30530.2721450.235918103X-RAY DIFFRACTION99
4.3053-4.56780.25541450.206118124X-RAY DIFFRACTION100
4.5678-4.9090.22271440.196818135X-RAY DIFFRACTION99
4.909-5.38220.26121450.222318230X-RAY DIFFRACTION100
5.3822-6.11440.25971460.239718127X-RAY DIFFRACTION99
6.1144-7.53720.26931440.223618093X-RAY DIFFRACTION99
7.5372-14.99990.15771440.168317940X-RAY DIFFRACTION97
精密化 TLS

手法: refined / Refine-ID: X-RAY DIFFRACTION

IDL11 (°2)L12 (°2)L13 (°2)L22 (°2)L23 (°2)L33 (°2)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T11 (Å2)T12 (Å2)T13 (Å2)T22 (Å2)T23 (Å2)T33 (Å2)Origin x (Å)Origin y (Å)Origin z (Å)
10.4592-0.2173-0.01480.61990.22070.62210.2086-0.1475-0.6333-0.0541-0.33120.20330.2222-0.2756-0.00020.8514-0.1656-0.12080.3387-0.18711.1253-85.2629-60.358521.919
22.17290.5226-0.07994.07590.26092.50220.4007-0.5845-0.04260.637-0.29290.31790.11830.018100.3639-0.20530.02720.347-0.02330.4873-71.2239-38.318136.2691
30.72990.0627-0.48061.28420.71090.94160.2118-0.55160.02720.6413-0.3511-0.4954-0.28070.5897-0.00011.0004-0.4419-0.05020.9048-0.06910.4972-51.6032-17.406547.9917
40.02510.02680.01750.03050.010.0538-0.2241-0.00130.15220.4274-0.1967-0.382-0.06860.33330.00110.613-0.1199-0.25181.0782-0.25220.7684-54.4512-36.499732.1082
50.1853-0.0119-0.08720.1583-0.03410.53180.0070.1298-0.1527-0.43820.22181.24140.3664-0.19530.00010.5595-0.2988-0.5610.606-0.08781.7646-109.8609-35.8632-2.2778
62.45840.5383-0.6653.0307-0.22152.04330.35220.51860.7446-0.79910.04321.3073-0.6643-0.52160.0356-0.1232-0.4372-0.69390.0497-0.12071.3018-97.8769-9.333-7.2418
70.1614-0.1277-0.11870.60610.01721.12380.0050.15760.6464-0.60030.1612-0.2192-0.81990.697-01.2174-0.1991-0.27540.730.15151.5074-85.275818.9967-7.9716
80.0237-0.0021-0.00660.00970.01720.0320.2613-0.21470.15130.30050.17750.1095-0.3813-0.05660.00191.1635-0.0121-0.27250.4451-0.07962.17-91.6285-0.91796.6411
90.3395-0.27320.1850.2314-0.21630.35870.00280.7242-0.8046-0.55820.05520.39430.30380.262701.1914-0.2029-0.29340.6624-0.41141.0501-79.2923-58.4176-20.3854
102.00130.75660.23431.79180.61311.4326-0.24760.4728-0.6047-0.84350.3361-0.21190.41880.3829-0.00021.0307-0.06780.13210.4633-0.45270.628-53.8688-42.8962-17.2502
111.16570.39930.62530.5774-0.25530.8307-0.10690.5521-0.1345-0.7801-0.034-0.4764-0.03110.7722-0.00720.5469-0.07930.33110.726-0.27530.7405-30.6419-22.1721-12.3245
120.0243-0.02-0.02350.01980.01170.0457-0.0163-0.0524-0.3579-0.03070.19030.7318-0.27080.1578-0.00460.9136-0.12760.41320.8508-0.27760.5801-54.7301-25.9359-19.9032
130.53610.01570.4190.4511-0.08370.4244-0.2449-0.1728-0.5472-0.36010.3460.04390.56280.2989-0.00131.1366-0.1626-0.07930.4-0.29381.1842-72.0015-67.24130.9493
142.77911.20.15442.09490.18331.01590.0954-0.1024-1.0447-0.0678-0.0578-0.45440.7910.20390.0050.52940.1903-00.2376-0.14350.8337-49.5236-51.818412.702
150.42820.36570.32160.62720.7250.8382-0.2022-0.176-0.51560.0519-0.0467-0.64670.39220.3747-0.00030.32330.137-0.02070.5849-0.0760.9318-28.6178-30.474318.5542
160.31160.1293-0.0080.054-0.00080.47030.02960.30150.109-0.08980.2472-0.3669-0.39920.1264-0.00160.44970.3039-0.06080.4856-0.17241.1612-40.505-41.85552.6496
171.0787-0.6230.21180.931-0.41270.6710.1887-0.54610.2010.3174-0.23241.13810.2908-0.45690.01330.6037-0.3699-0.06820.4027-0.14391.4108-103.2194-44.195821.2552
182.0022-0.0559-0.66892.29781.06442.07840.1946-0.28170.29550.3585-0.17060.91060.0404-0.07070.01860.1167-0.24330.19050.4261-0.31071.3219-94.2707-16.462526.8278
190.7835-0.36350.05890.90440.22371.3090.263-0.20390.0895-0.35660.1466-0.0886-0.67840.443600.6384-0.39060.42820.6199-0.41661.6281-81.208910.790530.8105
200.40880.0368-0.34710.4865-0.33120.4862-0.64060.94250.2132-1.14520.58260.68750.2759-0.0377-0.00031.09-0.4759-0.60960.7667-0.23271.2985-99.1143-41.5466-23.0536
212.05050.8666-0.2921.53460.1360.8274-0.31250.84910.0487-1.31880.40310.50570.1317-0.10370.10331.0607-0.3397-0.58450.4285-0.13760.6531-78.2229-21.7228-27.2999
221.03770.2198-0.22151.4037-0.54691.09610.00520.37630.1032-1.09190.18620.2644-0.23170.13630.00570.78-0.2551-0.08320.4752-0.24160.3939-57.7411-1.1205-17.703
232.27380.7619-0.49321.0701-0.54740.67860.6687-0.1765-0.49680.1028-0.12660.2880.0924-0.05880.9982-0.85890.08910.97030.2032-0.4401-0.9813-40.142613.023210.338
241.3760.6324-0.4791.7326-0.32250.9850.1964-0.2549-0.16740.2209-0.2591-0.1860.03450.46360.05050.1742-0.17810.06850.5824-0.07290.1783-27.045115.265623.8301
250.01650.08290.07660.37310.35750.34010.26960.67170.7952-0.3242-0.0799-0.219-0.5295-0.3239-01.08990.4450.42420.85710.51031.4713-52.915198.683-68.392
262.42670.1031-0.08232.91210.01541.30270.21410.56630.4749-0.7736-0.2286-0.18190.05340.29530.00010.94340.3690.3440.86510.34650.7329-33.923275.9772-71.9352
270.1255-0.05110.25690.75570.43910.93770.20020.05540.2341-0.227-0.1945-0.67380.11050.9375-0.00011.150.43990.42991.21430.15030.8327-11.856154.3114-70.1122
280.3208-0.1194-0.05020.05610.02210.00940.28240.0233-0.15060.2010.1623-0.23930.27520.15040.0041.20450.22840.17251.1292-0.13741.267-22.702973.8251-58.8859
290.49250.0397-0.12990.42190.08170.38130.39440.50860.2973-0.4933-0.09430.4703-0.1824-0.226-00.80850.5714-0.16750.91470.29010.7894-87.519775.4226-62.756
302.6868-0.1732-0.03662.7997-0.44322.35110.32620.4801-0.358-0.5122-0.25520.74520.1967-0.436-0.06650.22030.341-0.32470.57-0.15430.5231-81.573448.6405-51.8258
310.50980.0573-0.5410.8158-0.15411.2091-0.3937-0.3137-1.07280.66230.0489-0.1220.94380.4785-0.00010.96070.20160.00220.8325-0.09161.4557-72.743819.9585-43.9981
320.0192-0.00230.01130.00360.00270.01170.30660.0006-0.1405-0.16150.1524-0.02530.1312-0.04980.00111.27820.3253-0.04521.021-0.17340.925-68.76239.7633-59.5515
330.52740.1505-0.03540.30160.14580.18390.2525-0.05571.22350.07530.04420.2156-0.6673-0.13070.00010.78650.40770.15730.5359-0.14211.4332-72.325497.4218-30.2573
342.9087-1.33990.56192.003-0.24231.8128-0.0735-0.49480.9660.43890.2420.0253-0.56050.1247-0.01410.48420.12730.02860.3479-0.42110.7587-50.339881.1511-18.0512
352.05280.0911-0.69541.74840.02630.85950.0939-0.96140.24560.8015-0.0547-0.43090.03070.5241-0.055-0.05090.176-0.30460.372-0.4765-0.0908-29.280759.7045-8.5748
360.0735-0.0043-0.03970.0132-0.01410.1699-0.48720.45990.1744-0.3090.1280.50950.2423-0.0695-0.0080.52010.0808-0.21380.4589-0.47820.3803-53.128664.2817-16.4054
370.4980.2567-0.07120.2768-0.09760.04290.16510.21731.0721-0.1178-0.0155-0.1776-0.96250.00590.00011.10250.23390.24590.58730.07921.6252-53.8709105.6067-43.469
381.8208-0.84740.83261.8551-0.1251.66340.21970.18691.2739-0.0036-0.068-0.52-0.67310.4046-00.7241-0.02610.22850.4456-0.09861.3841-29.26789.3484-40.0576
390.8229-0.6122-0.5340.84750.09170.76550.1281-0.04650.86240.1743-0.1378-0.8381-0.55770.6804-0.00930.4692-0.05710.04630.7577-0.1961.2134-9.545267.3635-32.6774
400.0071-0.00990.01760.0169-0.02170.0548-0.133-0.3397-0.19530.267-0.1948-0.1610.05740.1808-0.00320.5407-0.1361-0.08060.8232-0.40811.3264-28.004679.3431-26.594
410.29780.15790.30810.41650.12740.3180.51991.00180.3025-1.1594-0.31880.43880.1020.08970.00081.28180.730.13931.14160.54780.9654-68.458483.1445-78.1077
421.4746-1.13950.26262.74921.0191.64570.36681.03770.2113-0.8192-0.1760.26910.0672-0.09110.00040.91370.5101-0.17171.15510.01750.2216-58.858355.0731-77.6622
430.89190.0719-0.4811.09090.26080.7413-0.07630.4124-0.5439-0.02030.29140.01620.363-0.061-0.00021.19190.4419-0.29811.0187-0.33630.4851-46.780527.3975-73.5229
440.78850.40310.28711.694-0.01070.6290.0228-0.00980.13140.27360.33121.2292-0.0959-0.3861-0.03240.57720.4940.02120.68430.19410.8754-90.556881.1504-39.5157
452.4355-1.48380.34632.6109-0.57230.9213-0.0453-0.32570.10330.20310.25150.4297-0.1786-0.3190.11330.22020.2384-0.00170.3848-0.07240.4925-76.644960.8505-23.9784
461.717-0.6113-0.24282.3711-0.72541.3841-0.1287-0.5474-0.38040.1440.0850.31670.2446-0.05920.03040.18520.2670.02830.4535-0.13240.3259-55.10839.5558-19.9803
471.0086-0.53640.36281.4322-0.90771.73550.13780.16910.0215-0.3495-0.2594-0.17870.28580.1404-0.16180.16290.13-0.00590.4488-0.13790.0731-25.342424.4145-32.6433
480.5496-0.05260.31372.0799-0.631.3098-0.0328-0.13210.022-0.2443-0.0859-0.33730.1350.4275-0.00070.16830.17460.10260.5956-0.03840.2752-6.811621.749-35.3912
490.6831-0.5298-0.1260.68510.12680.34310.0932-0.5780.66250.09520.2274-0.3951-0.65870.78450.00541.3519-0.1925-0.49390.7655-0.4140.5939-29.578679.129383.774
502.32390.8550.55782.5270.70093.24-0.0748-0.1976-0.28710.44080.1333-0.3152-0.10910.3865-0.11470.70860.0786-0.23180.4572-0.09150.0625-38.892651.441277.8225
510.76170.2499-0.17641.29780.62540.73230.191-0.3328-1.14581.0655-0.21580.40630.7238-0.17440.00010.99760.1208-0.16050.59820.04450.992-53.143724.014775.7299
520.03330.03640.00650.2703-0.05260.01870.1048-0.1187-0.31890.21410.03320.17510.5149-0.3262-0.00111.4058-0.0052-0.14060.69430.05750.8749-53.472246.833386.0719
530.7322-0.1877-0.16540.1853-0.04390.1228-0.0620.19250.9533-0.35880.32320.0011-0.60930.63880.01481.2707-0.5003-0.28640.5537-0.00530.6634-38.882495.321845.789
542.9411-0.0002-0.11741.3458-0.19921.6914-0.2090.80230.3439-0.33970.0168-0.1082-0.7999-0.05890.00431.3171-0.1072-0.3120.2603-0.0180.0785-60.681180.693232.2639
551.0679-0.42280.25051.16150.15640.5757-0.0057-0.0583-0.3759-0.0215-0.13221.2969-0.1807-0.74550.00281.27140.1585-0.54781.0845-0.16590.8466-80.931161.698718.442
560.0120.0061-0.01270.005-0.00630.0139-0.0460.0938-0.0979-0.19670.1127-0.26270.1022-0.2228-0.00151.75180.0684-0.47291.1704-0.08960.5937-59.376963.370231.9728
570.2136-0.0855-0.15590.2908-0.20920.39070.0492-0.41010.71180.42010.1348-0.0823-0.35320.38810.00011.81460.1885-0.47880.3918-0.40610.9965-61.3245107.773179.1529
581.19150.1834-0.34981.1636-0.63320.6743-0.2299-0.45320.29970.415-0.32770.6951-0.4712-0.50180.0251.36340.3837-0.25630.8277-0.76530.7758-82.485287.05783.6427
590.4410.2923-0.20490.478-0.16870.0928-0.2191-0.1664-0.05610.314-0.21670.535-0.1985-0.9208-0.00050.92930.16810.36921.1646-0.6281.0144-103.170263.286283.0787
600.0552-0.0373-0.02060.02530.01170.0501-0.08560.0166-0.2009-0.0653-0.0940.2021-0.07290.2542-0.0020.56240.2110.01031.1936-0.44420.5736-90.455880.93269.7038
610.8669-0.29480.04440.8614-0.33590.3133-0.0763-1.30460.5302-0.12190.25980.3177-0.89040.64390.00861.6531-0.0034-0.47540.8142-0.46790.6058-49.045493.211793.7752
621.25470.502-0.16371.40250.06681.8523-0.219-0.68450.26510.6975-0.30480.276-0.0676-0.1709-0.21851.54580.178-0.02420.8961-0.37440.1935-62.736767.203697.9302
630.1441-0.0486-0.08830.5605-0.21770.1937-0.304-0.59940.05310.60450.02170.41250.2669-0.498201.5512-0.08310.50251.3841-0.29460.699-81.480343.340295.6138
640.0096-0.00190.00150.0015-0.00140.00090.2357-0.0015-0.0027-0.01540.13460.30770.0992-0.24360.00161.79620.05740.03480.881-0.2230.5057-79.07666.042494.2986
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770.0230.0143-0.00540.0448-0.00640.00790.197-0.3095-0.40510.2731-0.216-0.240.5922-0.136201.49650.13990.18511.1096-0.02661.9253-1.5237-57.2012-63.3618
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860.75340.06680.48971.1488-0.9811.3272-0.29260.7105-0.1343-0.57960.053-0.8605-0.38540.5866-0.04091.3107-0.13280.87411.4134-0.75370.72179.7552-25.7387-117.9724
870.4160.32730.03110.26730.00850.19610.14120.79410.31550.0424-0.1762-0.21-0.0862-0.144101.5865-0.11690.36781.4021-0.24250.6478-7.5041-2.0516-126.1929
880.0414-0.05980.080.0851-0.11590.19350.02320.05330.1085-0.1621-0.04370.2187-0.0895-0.0730.00052.72070.0240.69471.9385-0.1540.2854-5.4864-24.8496-124.9108
890.1327-0.02580.05480.0045-0.02480.30990.2457-0.2571-0.74130.64880.40640.07170.59891.16510.00080.84590.35470.30540.8554-0.51292.173217.5355-40.2511-65.3043
901.41790.6530.54532.10571.29662.3099-0.3418-0.1925-0.94970.05610.353-0.25320.2521-0.03160.00020.54130.21610.42550.6779-0.19981.0803-2.7419-19.0766-60.7717
910.93770.4294-0.30681.5608-0.39290.6612-0.3723-0.0918-0.414-0.33810.07660.9137-0.023-0.41840.02030.74880.48110.14341.2443-0.28280.8341-24.20112.5528-60.5449
920.06-0.0560.03420.1848-0.11510.06820.3713-0.6703-1.1819-0.05650.06240.69840.8035-0.11980.00051.64890.0743-0.03491.0165-0.36771.8996-10.6757-70.8601-81.1132
930.4907-0.0494-0.0521.129-0.33150.53550.2588-0.0787-0.806-0.2434-0.30.48760.8481-0.69430.0031.2232-0.3710.31840.7905-0.56881.2493-32.5456-55.7355-92.9594
940.7031-0.05880.55950.4848-0.31080.587-0.1404-0.1488-0.3541-0.33850.0103-0.01830.1937-0.77401.2153-0.13260.1341.3237-0.70771.2714-47.0779-29.8138-100.166
950.29930.0390.1782.388-0.66631.0187-0.13810.3499-0.4311-0.72590.0660.9394-0.2154-0.63330.02281.15890.0827-0.09491.43-0.8230.6484-45.32085.8603-102.3741
961.4767-0.34480.0250.3673-0.06450.95560.02280.7812-0.0122-0.94780.08550.0291-0.508-0.54010.00191.25650.1758-0.02521.5086-0.39380.245-41.522923.0782-108.9905
精密化 TLSグループ
IDRefine-IDRefine TLS-IDSelection detailsAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1( CHAIN A AND RESID 24:94 )A24 - 94
2X-RAY DIFFRACTION2( CHAIN A AND RESID 95:382 )A95 - 382
3X-RAY DIFFRACTION3( CHAIN A AND RESID 383:511 )A383 - 511
4X-RAY DIFFRACTION4( CHAIN A AND RESID 600:601 )A600 - 601
5X-RAY DIFFRACTION5( CHAIN B AND RESID 26:94 )B26 - 94
6X-RAY DIFFRACTION6( CHAIN B AND RESID 95:382 )B95 - 382
7X-RAY DIFFRACTION7( CHAIN B AND RESID 383:511 )B383 - 511
8X-RAY DIFFRACTION8( CHAIN B AND RESID 600:601 )B600 - 601
9X-RAY DIFFRACTION9( CHAIN C AND RESID 25:94 )C25 - 94
10X-RAY DIFFRACTION10( CHAIN C AND RESID 95:382 )C95 - 382
11X-RAY DIFFRACTION11( CHAIN C AND RESID 383:511 )C383 - 511
12X-RAY DIFFRACTION12( CHAIN C AND RESID 600:601 )C600 - 601
13X-RAY DIFFRACTION13( CHAIN D AND RESID 2:74 )D2 - 74
14X-RAY DIFFRACTION14( CHAIN D AND RESID 75:344 )D75 - 344
15X-RAY DIFFRACTION15( CHAIN D AND RESID 345:459 )D345 - 459
16X-RAY DIFFRACTION16( CHAIN D AND RESID 600:601 )D600 - 601
17X-RAY DIFFRACTION17( CHAIN E AND RESID 2:74 )E2 - 74
18X-RAY DIFFRACTION18( CHAIN E AND RESID 75:344 )E75 - 344
19X-RAY DIFFRACTION19( CHAIN E AND RESID 345:459 )E345 - 459
20X-RAY DIFFRACTION20( CHAIN F AND RESID 2:74 )F2 - 74
21X-RAY DIFFRACTION21( CHAIN F AND RESID 75:344 )F75 - 344
22X-RAY DIFFRACTION22( CHAIN F AND RESID 345:459 )F345 - 459
23X-RAY DIFFRACTION23( CHAIN G AND ( RESID 1:284 OR RESID 300:300 OR RESID 287:296 ) )G1 - 284
24X-RAY DIFFRACTION23( CHAIN G AND ( RESID 1:284 OR RESID 300:300 OR RESID 287:296 ) )G300
25X-RAY DIFFRACTION23( CHAIN G AND ( RESID 1:284 OR RESID 300:300 OR RESID 287:296 ) )G287 - 296
26X-RAY DIFFRACTION24( CHAIN H AND ( RESID 1:138 OR RESID 200:200 OR RESID 139:142 ) )H1 - 138
27X-RAY DIFFRACTION24( CHAIN H AND ( RESID 1:138 OR RESID 200:200 OR RESID 139:142 ) )H200
28X-RAY DIFFRACTION24( CHAIN H AND ( RESID 1:138 OR RESID 200:200 OR RESID 139:142 ) )H139 - 142
29X-RAY DIFFRACTION25( CHAIN I AND RESID 24:94 )I24 - 94
30X-RAY DIFFRACTION26( CHAIN I AND RESID 95:382 )I95 - 382
31X-RAY DIFFRACTION27( CHAIN I AND RESID 383:511 )I383 - 511
32X-RAY DIFFRACTION28( CHAIN I AND RESID 600:601 )I600 - 601
33X-RAY DIFFRACTION29( CHAIN J AND RESID 26:94 )J26 - 94
34X-RAY DIFFRACTION30( CHAIN J AND RESID 95:382 )J95 - 382
35X-RAY DIFFRACTION31( CHAIN J AND RESID 383:511 )J383 - 511
36X-RAY DIFFRACTION32( CHAIN J AND RESID 600:601 )J600 - 601
37X-RAY DIFFRACTION33( CHAIN K AND RESID 25:94 )K25 - 94
38X-RAY DIFFRACTION34( CHAIN K AND RESID 95:382 )K95 - 382
39X-RAY DIFFRACTION35( CHAIN K AND RESID 383:511 )K383 - 511
40X-RAY DIFFRACTION36( CHAIN K AND RESID 600:601 )K600 - 601
41X-RAY DIFFRACTION37( CHAIN L AND RESID 2:74 )L2 - 74
42X-RAY DIFFRACTION38( CHAIN L AND RESID 75:344 )L75 - 344
43X-RAY DIFFRACTION39( CHAIN L AND RESID 345:459 )L345 - 459
44X-RAY DIFFRACTION40( CHAIN L AND RESID 600:601 )L600 - 601
45X-RAY DIFFRACTION41( CHAIN M AND RESID 2:74 )M2 - 74
46X-RAY DIFFRACTION42( CHAIN M AND RESID 75:344 )M75 - 344
47X-RAY DIFFRACTION43( CHAIN M AND RESID 345:459 )M345 - 459
48X-RAY DIFFRACTION44( CHAIN N AND RESID 2:74 )N2 - 74
49X-RAY DIFFRACTION45( CHAIN N AND RESID 75:344 )N75 - 344
50X-RAY DIFFRACTION46( CHAIN N AND RESID 345:459 )N345 - 459
51X-RAY DIFFRACTION47( CHAIN O AND ( RESID 1:284 OR RESID 300:300 OR RESID 287:291 ) )O1 - 284
52X-RAY DIFFRACTION47( CHAIN O AND ( RESID 1:284 OR RESID 300:300 OR RESID 287:291 ) )O300
53X-RAY DIFFRACTION47( CHAIN O AND ( RESID 1:284 OR RESID 300:300 OR RESID 287:291 ) )O287 - 291
54X-RAY DIFFRACTION48( CHAIN P AND ( RESID 1:138 OR RESID 200:200 OR RESID 139:140 ) )P1 - 138
55X-RAY DIFFRACTION48( CHAIN P AND ( RESID 1:138 OR RESID 200:200 OR RESID 139:140 ) )P200
56X-RAY DIFFRACTION48( CHAIN P AND ( RESID 1:138 OR RESID 200:200 OR RESID 139:140 ) )P139 - 140
57X-RAY DIFFRACTION49( CHAIN Q AND RESID 24:94 )Q24 - 94
58X-RAY DIFFRACTION50( CHAIN Q AND RESID 95:382 )Q95 - 382
59X-RAY DIFFRACTION51( CHAIN Q AND RESID 383:511 )Q383 - 511
60X-RAY DIFFRACTION52( CHAIN Q AND RESID 600:601 )Q600 - 601
61X-RAY DIFFRACTION53( CHAIN R AND RESID 26:94 )R26 - 94
62X-RAY DIFFRACTION54( CHAIN R AND RESID 95:382 )R95 - 382
63X-RAY DIFFRACTION55( CHAIN R AND RESID 383:511 )R383 - 511
64X-RAY DIFFRACTION56( CHAIN R AND RESID 600:601 )R600 - 601
65X-RAY DIFFRACTION57( CHAIN S AND RESID 25:94 )S25 - 94
66X-RAY DIFFRACTION58( CHAIN S AND RESID 95:382 )S95 - 382
67X-RAY DIFFRACTION59( CHAIN S AND RESID 383:511 )S383 - 511
68X-RAY DIFFRACTION60( CHAIN S AND RESID 600:601 )S600 - 601
69X-RAY DIFFRACTION61( CHAIN T AND RESID 2:74 )T2 - 74
70X-RAY DIFFRACTION62( CHAIN T AND RESID 75:344 )T75 - 344
71X-RAY DIFFRACTION63( CHAIN T AND RESID 345:459 )T345 - 459
72X-RAY DIFFRACTION64( CHAIN T AND RESID 600:601 )T600 - 601
73X-RAY DIFFRACTION65( CHAIN U AND RESID 2:74 )U2 - 74
74X-RAY DIFFRACTION66( CHAIN U AND RESID 75:344 )U75 - 344
75X-RAY DIFFRACTION67( CHAIN U AND RESID 345:459 )U345 - 459
76X-RAY DIFFRACTION68( CHAIN V AND RESID 2:74 )V2 - 74
77X-RAY DIFFRACTION69( CHAIN V AND RESID 75:344 )V75 - 344
78X-RAY DIFFRACTION70( CHAIN V AND RESID 345:459 )V345 - 459
79X-RAY DIFFRACTION71( CHAIN W AND ( RESID 1:284 OR RESID 300:300 ) )W1 - 284
80X-RAY DIFFRACTION71( CHAIN W AND ( RESID 1:284 OR RESID 300:300 ) )W300
81X-RAY DIFFRACTION72( CHAIN X AND ( RESID 1:138 OR RESID 139:139 ) )X1 - 138
82X-RAY DIFFRACTION72( CHAIN X AND ( RESID 1:138 OR RESID 139:139 ) )X139
83X-RAY DIFFRACTION73( CHAIN Y AND RESID 24:94 )Y24 - 94
84X-RAY DIFFRACTION74( CHAIN Y AND RESID 95:382 )Y95 - 382
85X-RAY DIFFRACTION75( CHAIN Y AND RESID 383:511 )Y383 - 511
86X-RAY DIFFRACTION76( CHAIN Y AND RESID 600:601 )Y600 - 601
87X-RAY DIFFRACTION77( CHAIN Z AND RESID 26:94 )Z26 - 94
88X-RAY DIFFRACTION78( CHAIN Z AND RESID 95:382 )Z95 - 382
89X-RAY DIFFRACTION79( CHAIN Z AND RESID 383:511 )Z383 - 511
90X-RAY DIFFRACTION80( CHAIN Z AND RESID 600:601 )Z600 - 601
91X-RAY DIFFRACTION81( CHAIN a AND RESID 25:94 )a25 - 94
92X-RAY DIFFRACTION82( CHAIN a AND RESID 95:382 )a95 - 382
93X-RAY DIFFRACTION83( CHAIN a AND RESID 383:511 )a383 - 511
94X-RAY DIFFRACTION84( CHAIN a AND RESID 600:601 )a600 - 601
95X-RAY DIFFRACTION85( CHAIN b AND RESID 2:74 )b2 - 74
96X-RAY DIFFRACTION86( CHAIN b AND RESID 75:344 )b75 - 344
97X-RAY DIFFRACTION87( CHAIN b AND RESID 345:459 )b345 - 459
98X-RAY DIFFRACTION88( CHAIN b AND RESID 600:601 )b600 - 601
99X-RAY DIFFRACTION89( CHAIN c AND RESID 2:74 )c2 - 74
100X-RAY DIFFRACTION90( CHAIN c AND RESID 75:344 )c75 - 344
101X-RAY DIFFRACTION91( CHAIN c AND RESID 345:459 )c345 - 459
102X-RAY DIFFRACTION92( CHAIN d AND RESID 2:74 )d2 - 74
103X-RAY DIFFRACTION93( CHAIN d AND RESID 75:344 )d75 - 344
104X-RAY DIFFRACTION94( CHAIN d AND RESID 345:459 )d345 - 459
105X-RAY DIFFRACTION95( CHAIN e AND RESID 1:284 )e1 - 284
106X-RAY DIFFRACTION96( CHAIN f AND RESID 1:138 )f1 - 138

+
万見について

-
お知らせ

-
2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

-
2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月：コロナウイルスプロテーアーゼ

+
2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか？ / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

+
2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例：em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

-
万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る