登録情報 | データベース: PDB / ID: 3nvk |
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タイトル | Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle |
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要素 | - 50S ribosomal protein L7Ae
- Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase
- NOP5/NOP56 related protein
- RNA (5'-R(*GP*AP*GP*CP*UP*UP*CP*AP*AP*CP*GP*GP*C)-3')
- RNA (5'-R(*GP*CP*CP*GP*UP*UP*GP*AP*AP*GP*CP*UP*CP*UP*GP*AP*CP*CP*GP*AP*AP*AP*GP*GP*CP*GP*UP*GP*AP*UP*GP*AP*GP*C)-3')
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キーワード | TRANSFERASE/RNA / Nop domain kink turn methyl transferase / ribosome biogenesis spliceosome biogenesis / TRANSFERASE-RNA complex |
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機能・相同性 | 機能・相同性情報
histone H2AQ104 methyltransferase activity / box C/D sno(s)RNA 3'-end processing / rRNA methyltransferase activity / ribonuclease P activity / tRNA 5'-leader removal / box C/D methylation guide snoRNP complex / tRNA processing / snoRNA binding / 転移酵素; 一炭素原子の基を移すもの; メチル基を移すもの / small-subunit processome ...histone H2AQ104 methyltransferase activity / box C/D sno(s)RNA 3'-end processing / rRNA methyltransferase activity / ribonuclease P activity / tRNA 5'-leader removal / box C/D methylation guide snoRNP complex / tRNA processing / snoRNA binding / 転移酵素; 一炭素原子の基を移すもの; メチル基を移すもの / small-subunit processome / rRNA processing / cytosolic small ribosomal subunit / rRNA binding / structural constituent of ribosome / translation / RNA binding類似検索 - 分子機能 Nucleotidyltransferase; domain 5 - #220 / Helix Hairpins - #4070 / Nop domain / : / : / Archaeal Nop5/56-rel, N-terminal domain / Helix hairpin bin domain superfamily / Nucleolar protein Nop56/Nop58 / rRNA 2'-O-methyltransferase fibrillarin-like / Fibrillarin, conserved site ...Nucleotidyltransferase; domain 5 - #220 / Helix Hairpins - #4070 / Nop domain / : / : / Archaeal Nop5/56-rel, N-terminal domain / Helix hairpin bin domain superfamily / Nucleolar protein Nop56/Nop58 / rRNA 2'-O-methyltransferase fibrillarin-like / Fibrillarin, conserved site / Fibrillarin / Fibrillarin signature. / Fibrillarin / Ribosomal protein L7Ae, archaea / NOSIC / NOSIC (NUC001) domain / Nop domain / Nop domain superfamily / Nop, C-terminal domain / snoRNA binding domain, fibrillarin / Nop domain profile. / Ribosomal protein L30/S12 / Serum Albumin; Chain A, Domain 1 / 60s Ribosomal Protein L30; Chain: A; / Ribosomal protein L7Ae conserved site / Ribosomal protein L7Ae signature. / Ribosomal protein L7Ae/L8/Nhp2 family / Vaccinia Virus protein VP39 / Ribosomal protein L7Ae/L30e/S12e/Gadd45 / Ribosomal protein L7Ae/L30e/S12e/Gadd45 family / 50S ribosomal protein L30e-like / Helix Hairpins / Nucleotidyltransferase; domain 5 / Phosphorylase Kinase; domain 1 / Phosphorylase Kinase; domain 1 / S-adenosyl-L-methionine-dependent methyltransferase superfamily / Rossmann fold / 2-Layer Sandwich / Orthogonal Bundle / 3-Layer(aba) Sandwich / Mainly Alpha / Alpha Beta類似検索 - ドメイン・相同性 S-ADENOSYLMETHIONINE / RNA / RNA (> 10) / Large ribosomal subunit protein eL8 / NOP5/NOP56 related protein / Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase類似検索 - 構成要素 |
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生物種 | ![](img/tx_archaea.gif) Pyrococcus furiosus (古細菌) |
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手法 | X線回折 / シンクロトロン / 分子置換 / 解像度: 3.209 Å |
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データ登録者 | Xue, S. / Wang, R. / Li, H. |
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引用 | ジャーナル: Mol.Cell / 年: 2010 タイトル: Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle. 著者: Xue, S. / Wang, R. / Yang, F. / Terns, R.M. / Terns, M.P. / Zhang, X. / Maxwell, E.S. / Li, H. |
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履歴 | 登録 | 2010年7月8日 | 登録サイト: RCSB / 処理サイト: RCSB |
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改定 1.0 | 2011年7月20日 | Provider: repository / タイプ: Initial release |
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改定 1.1 | 2024年2月21日 | Group: Data collection / Database references / Derived calculations カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / struct_ref_seq_dif / struct_site Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_ref_seq_dif.details / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id |
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