Resolution: 2.26→30 Å / Cor.coef. Fo:Fc: 0.924 / Cor.coef. Fo:Fc free: 0.896 / WRfactor Rfree: 0.25 / WRfactor Rwork: 0.214 / SU B: 5.899 / SU ML: 0.146 / Cross valid method: THROUGHOUT / σ(F): 0 / ESU R Free: 0.18 / Stereochemistry target values: MAXIMUM LIKELIHOOD Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY. PHENIX, COOT and the molprobity server were also used during refinement.
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.271
2121
2.009 %
RANDOM
Rwork
0.235
-
-
-
obs
0.236
105554
99.254 %
-
Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: MASK BULK SOLVENT
Displacement parameters
Biso mean: 24.726 Å2
Baniso -1
Baniso -2
Baniso -3
1-
-2.158 Å2
0 Å2
0 Å2
2-
-
0.399 Å2
0 Å2
3-
-
-
1.759 Å2
Refinement step
Cycle: LAST / Resolution: 2.26→30 Å
Protein
Nucleic acid
Ligand
Solvent
Total
Num. atoms
8355
0
91
201
8647
Refine LS restraints
Refine-ID
Type
Dev ideal
Dev ideal target
Number
X-RAY DIFFRACTION
r_bond_refined_d
0.016
0.022
8662
X-RAY DIFFRACTION
r_bond_other_d
0.001
0.02
5736
X-RAY DIFFRACTION
r_angle_refined_deg
1.456
1.953
11779
X-RAY DIFFRACTION
r_angle_other_deg
0.866
3
14046
X-RAY DIFFRACTION
r_dihedral_angle_1_deg
6.032
5
1091
X-RAY DIFFRACTION
r_dihedral_angle_2_deg
38.172
24.795
415
X-RAY DIFFRACTION
r_dihedral_angle_3_deg
14.167
15
1410
X-RAY DIFFRACTION
r_dihedral_angle_4_deg
19.296
15
41
X-RAY DIFFRACTION
r_chiral_restr
0.084
0.2
1315
X-RAY DIFFRACTION
r_gen_planes_refined
0.006
0.021
9720
X-RAY DIFFRACTION
r_gen_planes_other
0.001
0.02
1725
X-RAY DIFFRACTION
r_mcbond_it
0.894
1.5
5398
X-RAY DIFFRACTION
r_mcbond_other
0.167
1.5
2162
X-RAY DIFFRACTION
r_mcangle_it
1.746
2
8735
X-RAY DIFFRACTION
r_scbond_it
2.581
3
3264
X-RAY DIFFRACTION
r_scangle_it
4.354
4.5
3032
LS refinement shell
Refine-ID: X-RAY DIFFRACTION / Total num. of bins used: 20
Resolution (Å)
Rfactor Rfree
Num. reflection Rfree
Rfactor Rwork
Num. reflection Rwork
Num. reflection all
% reflection obs (%)
2.26-2.318
0
0.321
7295
7755
94.068
2.318-2.381
0.366
192
0.31
7288
7515
99.534
2.381-2.45
0.327
178
0.284
7101
7297
99.753
2.45-2.525
0.326
173
0.267
6958
7145
99.804
2.525-2.607
0.295
161
0.257
6774
6946
99.842
2.607-2.698
0.293
53
0.252
6615
6688
99.701
2.698-2.799
0.292
94
0.247
6365
6476
99.737
2.799-2.912
0.26
131
0.232
6102
6255
99.648
2.912-3.04
0.262
145
0.227
5836
6003
99.634
3.04-3.187
0.293
123
0.233
5597
5739
99.669
3.187-3.357
0.267
198
0.232
5257
5479
99.562
3.357-3.558
0.254
98
0.216
5100
5216
99.655
3.558-3.8
0.246
90
0.211
4796
4903
99.653
3.8-4.099
0.223
77
0.2
4466
4555
99.737
4.099-4.482
0.224
138
0.188
4100
4253
99.647
4.482-4.997
0.179
50
0.182
3786
3850
99.636
4.997-5.744
0.27
71
0.235
3358
3451
99.363
5.744-6.971
0.33
73
0.292
2875
2960
99.595
6.971-9.603
0.229
47
0.247
2301
2363
99.365
9.603-30
0.456
29
0.267
1463
1498
99.599
+
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