nodavirus endopeptidase / permeabilization of host organelle membrane involved in viral entry into host cell / symbiont entry into host cell via permeabilization of inner membrane / T=3 icosahedral viral capsid / aspartic-type endopeptidase activity / proteolysis / metal ion binding Similarity search - Function
#200 - Aug 2016 Quasisymmetry in Icosahedral Viruses similarity (1)
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Assembly
Deposited unit
A: Coat protein beta B: Coat protein beta C: Coat protein beta D: Coat protein gamma E: Coat protein gamma F: Coat protein gamma R: RNA (5'-R(*UP*UP*U*AP*UP*CP*UP*(P))-3') hetero molecules
A: Coat protein beta B: Coat protein beta C: Coat protein beta D: Coat protein gamma E: Coat protein gamma F: Coat protein gamma R: RNA (5'-R(*UP*UP*U*AP*UP*CP*UP*(P))-3') hetero molecules
A: Coat protein beta B: Coat protein beta C: Coat protein beta D: Coat protein gamma E: Coat protein gamma F: Coat protein gamma R: RNA (5'-R(*UP*UP*U*AP*UP*CP*UP*(P))-3') hetero molecules
x 5
icosahedral pentamer
671 kDa, 35 polymers
Theoretical mass
Number of molelcules
Total (without water)
671,271
60
Polymers
668,870
35
Non-polymers
2,402
25
Water
0
Type
Name
Symmetry operation
Number
identity operation
1_555
x,y,z
1
point symmetry operation
4
4
A: Coat protein beta B: Coat protein beta C: Coat protein beta D: Coat protein gamma E: Coat protein gamma F: Coat protein gamma R: RNA (5'-R(*UP*UP*U*AP*UP*CP*UP*(P))-3') hetero molecules
x 6
icosahedral 23 hexamer
806 kDa, 42 polymers
Theoretical mass
Number of molelcules
Total (without water)
805,526
72
Polymers
802,644
42
Non-polymers
2,882
30
Water
0
Type
Name
Symmetry operation
Number
identity operation
1_555
x,y,z
1
point symmetry operation
5
5
Idetical with deposited unit in distinct coordinate
icosahedral asymmetric unit, std point frame
Type
Name
Symmetry operation
Number
transform to point frame
1
6
A: Coat protein beta B: Coat protein beta C: Coat protein beta D: Coat protein gamma E: Coat protein gamma F: Coat protein gamma R: RNA (5'-R(*UP*UP*U*AP*UP*CP*UP*(P))-3') hetero molecules
x 60
crystal asymmetric unit, crystal frame
8.06 MDa, 420 polymers
Theoretical mass
Number of molelcules
Total (without water)
8,055,257
720
Polymers
8,026,439
420
Non-polymers
28,819
300
Water
0
Type
Name
Symmetry operation
Number
identity operation
1_555
x,y,z
2
point symmetry operation
59
Unit cell
Length a, b, c (Å)
477.088, 404.929, 476.189
Angle α, β, γ (deg.)
90.00, 90.63, 90.00
Int Tables number
5
Space group name H-M
C121
Symmetry
Point symmetry: (Schoenflies symbol: I (icosahedral))