nodavirus endopeptidase / permeabilization of host organelle membrane involved in viral entry into host cell / symbiont entry into host cell via permeabilization of inner membrane / T=3 icosahedral viral capsid / aspartic-type endopeptidase activity / proteolysis / metal ion binding Similarity search - Function
#200 - Aug 2016 Quasisymmetry in Icosahedral Viruses similarity (1)
-
Assembly
Deposited unit
A: Capsid protein beta D: Capsid protein Gamma B: Capsid protein beta E: Capsid protein Gamma C: Capsid protein beta F: Capsid protein Gamma R: Random cellular RNA fragments hetero molecules
A: Capsid protein beta D: Capsid protein Gamma B: Capsid protein beta E: Capsid protein Gamma C: Capsid protein beta F: Capsid protein Gamma R: Random cellular RNA fragments hetero molecules
A: Capsid protein beta D: Capsid protein Gamma B: Capsid protein beta E: Capsid protein Gamma C: Capsid protein beta F: Capsid protein Gamma R: Random cellular RNA fragments hetero molecules
x 5
icosahedral pentamer
682 kDa, 35 polymers
Theoretical mass
Number of molelcules
Total (without water)
682,357
75
Polymers
677,803
35
Non-polymers
4,553
40
Water
540
30
Type
Name
Symmetry operation
Number
identity operation
1_555
x,y,z
1
point symmetry operation
4
4
A: Capsid protein beta D: Capsid protein Gamma B: Capsid protein beta E: Capsid protein Gamma C: Capsid protein beta F: Capsid protein Gamma R: Random cellular RNA fragments hetero molecules
x 6
icosahedral 23 hexamer
819 kDa, 42 polymers
Theoretical mass
Number of molelcules
Total (without water)
818,828
90
Polymers
813,364
42
Non-polymers
5,464
48
Water
649
36
Type
Name
Symmetry operation
Number
identity operation
1_555
x,y,z
1
point symmetry operation
5
5
Idetical with deposited unit in distinct coordinate
icosahedral asymmetric unit, std point frame
Type
Name
Symmetry operation
Number
transform to point frame
1
6
A: Capsid protein beta D: Capsid protein Gamma B: Capsid protein beta E: Capsid protein Gamma C: Capsid protein beta F: Capsid protein Gamma R: Random cellular RNA fragments hetero molecules
x 20
crystal asymmetric unit, crystal frame
2.73 MDa, 140 polymers
Theoretical mass
Number of molelcules
Total (without water)
2,729,427
300
Polymers
2,711,214
140
Non-polymers
18,214
160
Water
2,162
120
Type
Name
Symmetry operation
Number
identity operation
1_555
x,y,z
2
point symmetry operation
19
Unit cell
Length a, b, c (Å)
326.480, 326.480, 772.400
Angle α, β, γ (deg.)
90.000, 90.000, 120.000
Int Tables number
146
Space group name H-M
H3
Symmetry
Point symmetry: (Schoenflies symbol: I (icosahedral))
Noncrystallographic symmetry (NCS)
NCS domain: (Details: chain AAAA,CCCC, using strict) NCS oper:
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