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Yorodumi- PDB-3hve: Structures of SPOP-Substrate Complexes: Insights into Molecular A... -
+Open data
-Basic information
Entry | Database: PDB / ID: 3hve | ||||||
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Title | Structures of SPOP-Substrate Complexes: Insights into Molecular Architectures of BTB-Cul3 Ubiquitin Ligases: GigaxoninBTB/3-box | ||||||
Components | (Gigaxonin) x 2 | ||||||
Keywords | protein binding / ligase / ubiquitin / Gigaxonin / Cytoplasm / Cytoskeleton / Disease mutation / Kelch repeat / Neurodegeneration / Phosphoprotein / Polymorphism / Ubl conjugation / Ubl conjugation pathway | ||||||
Function / homology | Function and homology information Cul3-RING ubiquitin ligase complex / cytoskeleton organization / Antigen processing: Ubiquitination & Proteasome degradation / Neddylation / protein ubiquitination / cytoskeleton / cytosol / cytoplasm Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / SAD / Resolution: 2.8 Å | ||||||
Authors | Zhuang, M. / Schulman, B.A. | ||||||
Citation | Journal: Mol.Cell / Year: 2009 Title: Structures of SPOP-substrate complexes: insights into molecular architectures of BTB-Cul3 ubiquitin ligases. Authors: Zhuang, M. / Calabrese, M.F. / Liu, J. / Waddell, M.B. / Nourse, A. / Hammel, M. / Miller, D.J. / Walden, H. / Duda, D.M. / Seyedin, S.N. / Hoggard, T. / Harper, J.W. / White, K.P. / Schulman, B.A. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 3hve.cif.gz | 86.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb3hve.ent.gz | 68.7 KB | Display | PDB format |
PDBx/mmJSON format | 3hve.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/hv/3hve ftp://data.pdbj.org/pub/pdb/validation_reports/hv/3hve | HTTPS FTP |
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-Related structure data
Related structure data | 3hqhC 3hqiC 3hqlC 3hqmC 3hsvC 3htmC 3hu6C 3ivqC 3ivvC C: citing same article (ref.) |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 29419.652 Da / Num. of mol.: 1 / Fragment: UNP residues 1-254 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: GAN, GAN1, KLHL16 / Production host: Escherichia coli (E. coli) / References: UniProt: Q9H2C0 |
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#2: Protein | Mass: 27927.311 Da / Num. of mol.: 1 / Fragment: UNP residues 1-254 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: GAN, GAN1, KLHL16 / Production host: Escherichia coli (E. coli) / References: UniProt: Q9H2C0 |
Sequence details | THE AUTHORS MODELED RESIDUES B165-B210 AS UNK, SINCE THE ELECTRON DENSITY IS POOR IN THIS REGION ...THE AUTHORS MODELED RESIDUES B165-B210 AS UNK, SINCE THE ELECTRON DENSITY IS POOR IN THIS REGION AND THEY DO NOT KNOW WHICH AMINO ACIDS THESE CORRESPOND |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.65 Å3/Da / Density % sol: 53.55 % |
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-Data collection
Diffraction source | Source: SYNCHROTRON / Site: ALS / Beamline: 8.2.2 / Wavelength: 0.9794 Å |
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Detector | Date: Apr 13, 2007 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9794 Å / Relative weight: 1 |
Reflection | Resolution: 2.8→100 Å / Num. obs: 15314 / Observed criterion σ(F): 0 / Redundancy: 3.2 % / Rsym value: 0.057 / Net I/σ(I): 20.8 |
Reflection shell | Resolution: 2.8→2.9 Å / Redundancy: 2.6 % / Mean I/σ(I) obs: 5.3 / Num. unique all: 903 / Rsym value: 0.171 |
-Processing
Software |
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Refinement | Method to determine structure: SAD / Resolution: 2.8→50 Å / σ(F): 0
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Refinement step | Cycle: LAST / Resolution: 2.8→50 Å
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