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Open data
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Basic information
Entry | Database: PDB / ID: 3h1r | ||||||
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Title | Order-disorder structure of fluorescent protein FP480 | ||||||
![]() | Fluorescent protein FP480 | ||||||
![]() | FLUORESCENT PROTEIN / OD-structure / order-disorder structure | ||||||
Function / homology | Green Fluorescent Protein / Green fluorescent protein / Green fluorescent protein-related / Green fluorescent protein / Green fluorescent protein / bioluminescence / Beta Barrel / Mainly Beta / Fluorescent protein FP480![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Pletnev, S. / Morozova, K.S. / Verkhusha, V.V. / Dauter, Z. | ||||||
![]() | ![]() Title: Rotational order-disorder structure of fluorescent protein FP480 Authors: Pletnev, S. / Morozova, K.S. / Verkhusha, V.V. / Dauter, Z. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 53.7 KB | Display | ![]() |
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PDB format | ![]() | 42.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 428.8 KB | Display | ![]() |
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Full document | ![]() | 445.5 KB | Display | |
Data in XML | ![]() | 13.1 KB | Display | |
Data in CIF | ![]() | 16.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein | Mass: 26336.914 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal grow | Temperature: 293 K / pH: 6.5 Details: 100mM Bis-Tris, 25% PEG 3350, 200mM MgCl2, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARMOSAIC 300 mm CCD / Detector: CCD |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 2.4→30 Å / Num. obs: 4611 / % possible obs: 99.9 % |
Reflection shell | Resolution: 2.4→2.49 Å / Rmerge(I) obs: 0.695 / % possible all: 100 |
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Processing
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Refinement | Method to determine structure: ![]() Details: U VALUES REFINED INDIVIDUALLY. THE COORDINATES REPRESENT THE CRYSTAL STRUCTURE OF FLUORESCENT PROTEIN FP480 SUFFERING FROM ROTATIONAL ORDER-DISORDER PATHOLOGY. THE LATTICE IS COMPOSED OF THE ...Details: U VALUES REFINED INDIVIDUALLY. THE COORDINATES REPRESENT THE CRYSTAL STRUCTURE OF FLUORESCENT PROTEIN FP480 SUFFERING FROM ROTATIONAL ORDER-DISORDER PATHOLOGY. THE LATTICE IS COMPOSED OF THE TETRAMERS WITH 222 SYMMETRY INCORPORATED INTO AN ARRAY IN TWO DIFFERENT ORIENTATIONS, ROTATED 90 DEGREES WITH RESPECT TO EACH OTHER AROUND THE CRYSTAL C-AXIS, WITH TETRAMER AXES COINCIDENT WITH CRYSTALLOGRAPHIC TWOFOLD AXES. THE DISTRIBUTION OF ALTERNATIVELY ORIENTED TETRAMERS IN THE CRYSTAL IS NEARLY RANDOM. THIS CREATES THE STRUCTURE WITH STATISTICALLY AVERAGED I422 SYMMETRY.
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Solvent computation | Solvent model: BABINET MODEL WITH MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 35.79 Å2
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Refinement step | Cycle: LAST / Resolution: 2.41→28.9 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.41→2.47 Å
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