DNA polymerase III, clamp loader complex / DNA clamp loader activity / DNA polymerase III complex / DNA polymerase processivity factor activity / 3'-5' exonuclease activity / DNA-templated DNA replication / ribonucleoside triphosphate phosphatase activity / DNA-directed DNA polymerase / DNA-directed DNA polymerase activity / DNA replication ...DNA polymerase III, clamp loader complex / DNA clamp loader activity / DNA polymerase III complex / DNA polymerase processivity factor activity / 3'-5' exonuclease activity / DNA-templated DNA replication / ribonucleoside triphosphate phosphatase activity / DNA-directed DNA polymerase / DNA-directed DNA polymerase activity / DNA replication / viral translational frameshifting / ATP hydrolysis activity / DNA binding / ATP binding / metal ion binding / identical protein binding Similarity search - Function
Zinc Finger, Delta Prime; domain 3 - #10 / DNA polymerase III, delta prime subunit / DNA polymerase III, delta subunit, C-terminal / : / DNA polymerase III, delta subunit, C terminal / DNA polymerase III subunit delta', AAA+ ATPase lid domain / DNA polymerase III subunit delta, C-terminal / Processivity clamp loader gamma complex DNA pol III C-term / Zinc Finger, Delta Prime; domain 3 / DNA polymerase III, delta subunit ...Zinc Finger, Delta Prime; domain 3 - #10 / DNA polymerase III, delta prime subunit / DNA polymerase III, delta subunit, C-terminal / : / DNA polymerase III, delta subunit, C terminal / DNA polymerase III subunit delta', AAA+ ATPase lid domain / DNA polymerase III subunit delta, C-terminal / Processivity clamp loader gamma complex DNA pol III C-term / Zinc Finger, Delta Prime; domain 3 / DNA polymerase III, delta subunit / DNA polymerase III delta, N-terminal / DNA polymerase III, delta subunit / DNA polymerase III, tau subunit, domain V / DNA polymerase III subunit tau, DnaB-binding domain IV / DNA polymerase III, tau subunit, domain V superfamily / DNA polymerase III subunits tau domain IV DnaB-binding / DNA polymerase III tau subunit V interacting with alpha / DNA polymerase III, subunit gamma/tau, helical lid domain / DNA polymerase III clamp loader subunit, ATPase lid domain / DNA polymerase III, subunit gamma/ tau, N-terminal / DNA polymerase III, gamma subunit, domain III / DNA polymerase III subunits gamma and tau domain III / Ubiquitin-associated (UBA) domain / DNA polymerase III, delta subunit / : / DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal / Helicase, Ruva Protein; domain 3 - #60 / ClpA/B family / Helicase, Ruva Protein; domain 3 / P-loop containing nucleotide triphosphate hydrolases / ATPases associated with a variety of cellular activities / AAA+ ATPase domain / Up-down Bundle / Rossmann fold / P-loop containing nucleoside triphosphate hydrolase / Orthogonal Bundle / 3-Layer(aba) Sandwich / Mainly Alpha / Alpha Beta Similarity search - Domain/homology
ADENOSINE-5'-DIPHOSPHATE / BERYLLIUM TRIFLUORIDE ION / DNA / DNA (> 10) / DNA polymerase III subunit tau / DNA polymerase III subunit delta / DNA polymerase III subunit delta' Similarity search - Component
A: DNA polymerase III subunit delta B: DNA polymerase III subunit tau C: DNA polymerase III subunit tau D: DNA polymerase III subunit tau E: DNA polymerase III subunit delta' F: DNA polymerase III subunit delta G: DNA polymerase III subunit tau H: DNA polymerase III subunit tau I: DNA polymerase III subunit tau J: DNA polymerase III subunit delta' K: DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*AP*TP*AP*GP*GP*CP*CP*AP*G)-3') L: DNA (5'-D(*CP*TP*GP*GP*CP*CP*TP*AP*TP*A)-3') M: DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*AP*TP*AP*GP*GP*CP*CP*AP*G)-3') N: DNA (5'-D(*CP*TP*GP*GP*CP*CP*TP*AP*TP*A)-3') hetero molecules
A: DNA polymerase III subunit delta B: DNA polymerase III subunit tau C: DNA polymerase III subunit tau D: DNA polymerase III subunit tau E: DNA polymerase III subunit delta' K: DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*AP*TP*AP*GP*GP*CP*CP*AP*G)-3') L: DNA (5'-D(*CP*TP*GP*GP*CP*CP*TP*AP*TP*A)-3') hetero molecules
F: DNA polymerase III subunit delta G: DNA polymerase III subunit tau H: DNA polymerase III subunit tau I: DNA polymerase III subunit tau J: DNA polymerase III subunit delta' M: DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*AP*TP*AP*GP*GP*CP*CP*AP*G)-3') N: DNA (5'-D(*CP*TP*GP*GP*CP*CP*TP*AP*TP*A)-3') hetero molecules
Method to determine structure: MOLECULAR REPLACEMENT / Resolution: 3.25→49.24 Å / Occupancy max: 1 / Occupancy min: 1 / SU ML: 0.35 / σ(F): 1.33 / Phase error: 27.76 / Stereochemistry target values: ML
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.263
4742
5.02 %
Copied from a lower resolution data set of a wildtype complex in the same crystal form (which had been chosen at random) and extended to the higher resolution at random using the ImportScaled program of the CCP4 program suite.
Rwork
0.224
-
-
-
obs
0.226
94510
98.62 %
-
Solvent computation
Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL / Bsol: 61.396 Å2 / ksol: 0.31 e/Å3