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- PDB-3fb9: The crystal structure of the protein with unknown function from S... -
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Open data
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Basic information
Entry | Database: PDB / ID: 3fb9 | ||||||
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Title | The crystal structure of the protein with unknown function from Streptococcus pneumoniae TIGR4 | ||||||
![]() | uncharacterized protein | ||||||
![]() | structural genomics / unknown function / MCSG / PSI2 / Protein Structure Initiative / Midwest Center for Structural Genomics | ||||||
Function / homology | Protein Veg / Biofilm formation stimulator VEG / SH3 type barrels. - #100 / SH3 type barrels. / Roll / regulation of DNA-templated transcription / Mainly Beta / Uncharacterized protein / Uncharacterized protein![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Zhang, R. / Li, H. / Abdullah, J. / Joachimiak, A. / Midwest Center for Structural Genomics (MCSG) | ||||||
![]() | ![]() Title: The crystal structure of the protein with unknown function from Streptococcus pneumoniae TIGR4 Authors: Zhang, R. / Li, H. / Abdullah, J. / Joachimiak, A. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 50.3 KB | Display | ![]() |
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PDB format | ![]() | 36.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 430.9 KB | Display | ![]() |
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Full document | ![]() | 432.2 KB | Display | |
Data in XML | ![]() | 11.2 KB | Display | |
Data in CIF | ![]() | 15.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 10411.871 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.14 Å3/Da / Density % sol: 42.55 % |
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Crystal grow | Temperature: 289 K / Method: vapor diffusion, sitting drop / pH: 7.5 Details: 0.2M NaCl, 0.1M Tris, 25%PEG3350, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315 / Detector: CCD / Date: Oct 3, 2007 / Details: mirrors |
Radiation | Monochromator: Si channel 111 / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9794 Å / Relative weight: 1 |
Reflection | Resolution: 1.8→42.76 Å / Num. all: 16314 / Num. obs: 16247 / % possible obs: 99.59 % / Observed criterion σ(F): 2 / Observed criterion σ(I): 2 / Redundancy: 9.4 % / Biso Wilson estimate: 13 Å2 / Rmerge(I) obs: 0.085 / Net I/σ(I): 29.64 |
Reflection shell | Resolution: 1.8→1.846 Å / Redundancy: 8.9 % / Rmerge(I) obs: 0.238 / Mean I/σ(I) obs: 8.14 / Num. unique all: 1248 / % possible all: 97.2 |
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Processing
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Refinement | Method to determine structure: ![]() Stereochemistry target values: MAXIMUM LIKELIHOOD WITH PHASES Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 12.274 Å2
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Refinement step | Cycle: LAST / Resolution: 1.8→42.76 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.799→1.846 Å / Total num. of bins used: 20
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Refinement TLS params. | Method: refined / Origin x: 23.539 Å / Origin y: 2.27 Å / Origin z: 24.486 Å
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Refinement TLS group |
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