登録情報 | データベース: PDB / ID: 3f5f |
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タイトル | Crystal structure of heparan sulfate 2-O-sulfotransferase from gallus gallus as a maltose binding protein fusion. |
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要素 | Maltose-binding periplasmic protein, Heparan sulfate 2-O-sulfotransferase 1 |
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キーワード | Transport / Transferase / maltose binding protein / fusion / heparan sulfate biosynthesis / sulfotransferase / Glycoprotein / Golgi apparatus / Membrane / Signal-anchor / Transmembrane / Periplasm / Sugar transport |
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機能・相同性 | 機能・相同性情報
heparan sulfate 2-O-sulfotransferase activity / HS-GAG biosynthesis / 転移酵素; 硫黄を含む基を移すもの; スルホトランスキナーゼ類 / ureteric bud formation / heparan sulfate proteoglycan biosynthetic process, enzymatic modification / heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process / heparin metabolic process / detection of maltose stimulus / maltose transport complex / carbohydrate transport ...heparan sulfate 2-O-sulfotransferase activity / HS-GAG biosynthesis / 転移酵素; 硫黄を含む基を移すもの; スルホトランスキナーゼ類 / ureteric bud formation / heparan sulfate proteoglycan biosynthetic process, enzymatic modification / heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process / heparin metabolic process / detection of maltose stimulus / maltose transport complex / carbohydrate transport / maltose binding / maltose transport / maltodextrin transmembrane transport / carbohydrate transmembrane transporter activity / ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing / ATP-binding cassette (ABC) transporter complex / cell chemotaxis / outer membrane-bounded periplasmic space / gene expression / periplasmic space / Golgi membrane / DNA damage response / identical protein binding / membrane類似検索 - 分子機能 Heparan sulphate 2-O-sulfotransferase / Sulfotransferase / Sulfotransferase family / Maltose/Cyclodextrin ABC transporter, substrate-binding protein / Solute-binding family 1, conserved site / Bacterial extracellular solute-binding proteins, family 1 signature. / Bacterial extracellular solute-binding protein / Bacterial extracellular solute-binding protein / P-loop containing nucleotide triphosphate hydrolases / P-loop containing nucleoside triphosphate hydrolase ...Heparan sulphate 2-O-sulfotransferase / Sulfotransferase / Sulfotransferase family / Maltose/Cyclodextrin ABC transporter, substrate-binding protein / Solute-binding family 1, conserved site / Bacterial extracellular solute-binding proteins, family 1 signature. / Bacterial extracellular solute-binding protein / Bacterial extracellular solute-binding protein / P-loop containing nucleotide triphosphate hydrolases / P-loop containing nucleoside triphosphate hydrolase / Rossmann fold / 3-Layer(aba) Sandwich / Alpha Beta類似検索 - ドメイン・相同性 alpha-maltose / ADENOSINE-3'-5'-DIPHOSPHATE / Maltose/maltodextrin-binding periplasmic protein / Heparan sulfate 2-O-sulfotransferase 1類似検索 - 構成要素 |
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生物種 | Escherichia coli K-12 (大腸菌) Gallus gallus (ニワトリ) |
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手法 | X線回折 / 分子置換 / 解像度: 2.65 Å |
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データ登録者 | Bethea, H.N. / Xu, D. / Liu, J. / Pedersen, L.C. |
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引用 | ジャーナル: Proc.Natl.Acad.Sci.USA / 年: 2008 タイトル: Redirecting the substrate specificity of heparan sulfate 2-O-sulfotransferase by structurally guided mutagenesis. 著者: Bethea, H.N. / Xu, D. / Liu, J. / Pedersen, L.C. |
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履歴 | 登録 | 2008年11月3日 | 登録サイト: RCSB / 処理サイト: RCSB |
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改定 1.0 | 2008年12月16日 | Provider: repository / タイプ: Initial release |
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改定 1.1 | 2011年7月13日 | Group: Version format compliance |
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改定 1.2 | 2017年8月23日 | Group: Refinement description / Source and taxonomy / カテゴリ: entity_src_gen / software |
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改定 2.0 | 2020年7月29日 | Group: Atomic model / Data collection ...Atomic model / Data collection / Database references / Derived calculations / Structure summary カテゴリ: atom_site / chem_comp ...atom_site / chem_comp / entity / entity_name_com / pdbx_branch_scheme / pdbx_chem_comp_identifier / pdbx_entity_branch / pdbx_entity_branch_descriptor / pdbx_entity_branch_link / pdbx_entity_branch_list / pdbx_entity_nonpoly / pdbx_molecule_features / pdbx_nonpoly_scheme / pdbx_struct_assembly_gen / struct_asym / struct_conn / struct_ref_seq_dif / struct_site / struct_site_gen Item: _atom_site.B_iso_or_equiv / _atom_site.Cartn_x ..._atom_site.B_iso_or_equiv / _atom_site.Cartn_x / _atom_site.Cartn_y / _atom_site.Cartn_z / _atom_site.auth_asym_id / _atom_site.auth_atom_id / _atom_site.auth_seq_id / _atom_site.label_asym_id / _atom_site.label_atom_id / _atom_site.type_symbol / _chem_comp.name / _chem_comp.type / _entity.formula_weight / _entity.pdbx_description / _entity.pdbx_number_of_molecules / _entity.type / _pdbx_struct_assembly_gen.asym_id_list / _struct_conn.pdbx_leaving_atom_flag / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_ref_seq_dif.details 解説: Carbohydrate remediation / Provider: repository / タイプ: Remediation |
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改定 2.1 | 2021年10月20日 | Group: Database references / Structure summary / カテゴリ: chem_comp / database_2 / struct_ref_seq_dif Item: _chem_comp.pdbx_synonyms / _database_2.pdbx_DOI ..._chem_comp.pdbx_synonyms / _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_ref_seq_dif.details |
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改定 2.2 | 2023年9月6日 | Group: Data collection / Refinement description カテゴリ: chem_comp_atom / chem_comp_bond / pdbx_initial_refinement_model |
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