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Open data
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Basic information
Entry | Database: PDB / ID: 387d | ||||||
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Title | RNA Pseudoknot with 3D Domain Swapping | ||||||
![]() | RNA Pseudoknot | ||||||
![]() | RNA / RNA PSEUDOKNOT | ||||||
Function / homology | RNA / RNA (> 10)![]() | ||||||
Method | ![]() | ||||||
![]() | Lietzke, S.E. / Kundrot, C.E. / Barnes, C.L. | ||||||
![]() | Journal: Structure, Motion, Interaction and Expression of Biological Macromolecules, The Proceedings of the Tenth Conversation held at The University-SUNY, Albany NY, June 17-21, 1997 Year: 1998 Title: The Structure of an RNA Pseudoknot Shows 3D Domain Swapping Authors: Lietzke, S.E. / Barnes, C.L. / Malone, V.F. / Jones, J.T. / Kundrot, C.E. #1: ![]() Title: Preliminary X-ray Diffraction Studies of an RNA Pseudoknot that Inhibits HIV-1 Reverse Transcriptase Authors: Jones, J.T. / Barnes, C.L. / Lietzke, S.E. / Wieichenrieder, O. / Doudna, J.A. / Kundrot, C.E. #2: ![]() Title: Comprehensive chemical modification interference and nucleotide substitution analysis of an RNA pseudoknot inhibitor to HIV-1 reverse transcriptase Authors: Green, L. / Waugh, S. / Brinkley, J.P. / Hostomska, Z. / Tuerk, C. #3: ![]() Title: RNA pseudoknots that inhibit human immunodeficiency Authors: Tuerk, C. / MacDougal, S. / Gould, L. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 21.9 KB | Display | ![]() |
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PDB format | ![]() | 15.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 339.5 KB | Display | ![]() |
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Full document | ![]() | 343.7 KB | Display | |
Data in XML | ![]() | 2 KB | Display | |
Data in CIF | ![]() | 2.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: RNA chain | Mass: 8390.091 Da / Num. of mol.: 1 / Source method: obtained synthetically / Details: 26-mer / ![]() |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 5.59 Å3/Da / Density % sol: 78 % | ||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 6.5 Details: pH 6.50, VAPOR DIFFUSION, HANGING DROP, temperature 293.00K | ||||||||||||||||||||||||||||||||||||||||||
Components of the solutions |
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() |
Detector | Type: SIEMENS / Detector: AREA DETECTOR / Date: Oct 26, 1995 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Resolution: 3.1→50 Å / Num. all: 3615 / Num. obs: 3615 / % possible obs: 95.2 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Redundancy: 2.7 % / Rmerge(I) obs: 0.051 |
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Processing
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Refinement | Resolution: 3.1→10 Å / σ(F): 2
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Refinement step | Cycle: LAST / Resolution: 3.1→10 Å
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Refine LS restraints |
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