Entry | Database: PDB / ID: 2wnf |
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Title | Crystal Structure of a Mammalian Sialyltransferase in complex with Gal-beta-1-3GalNAc-ortho-nitrophenol |
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Components | CMP-N-ACETYLNEURAMINATE-BETA-GALACTOSAMIDE-ALPHA-2,3-SIALYLTRANSFERASE |
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Keywords | TRANSFERASE / GLYCOSYLTRANSFERASE / DISULFIDE BOND / GOLGI APPARATUS / SIALYLTRANSFERASE / GLYCOPROTEIN / SIGNAL-ANCHOR / TRANSMEMBRANE / MEMBRANE / SECRETED / SIALIC ACID |
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Function / homology | Function and homology information
beta-D-galactosyl-(1->3)-N-acetyl-beta-D-galactosaminide alpha-2,3-sialyltransferase / beta-galactoside alpha-2,3-sialyltransferase / beta-galactoside (CMP) alpha-2,3-sialyltransferase activity / ganglioside biosynthetic process via lactosylceramide / beta-D-galactosyl-(1->3)-N-acetyl-beta-D-galactosaminide alpha-2,3- sialyltransferase / Golgi medial cisterna membrane / Golgi trans cisterna membrane / N-acetylneuraminate metabolic process / sialylation / protein N-linked glycosylation ...beta-D-galactosyl-(1->3)-N-acetyl-beta-D-galactosaminide alpha-2,3-sialyltransferase / beta-galactoside alpha-2,3-sialyltransferase / beta-galactoside (CMP) alpha-2,3-sialyltransferase activity / ganglioside biosynthetic process via lactosylceramide / beta-D-galactosyl-(1->3)-N-acetyl-beta-D-galactosaminide alpha-2,3- sialyltransferase / Golgi medial cisterna membrane / Golgi trans cisterna membrane / N-acetylneuraminate metabolic process / sialylation / protein N-linked glycosylation / protein glycosylation / trans-Golgi network membrane / extracellular region / membraneSimilarity search - Function Glycosyl transferase family 29 / Glycosyl transferase family 29 / Sialyltransferase / GT29-like superfamiliy / Glycosyltransferase family 29 (sialyltransferase) / sialyltransferase cstii, chain A / Alpha-Beta Complex / Alpha BetaSimilarity search - Domain/homology Thomsen-Friedenreich antigen / HYDROXY(2-HYDROXYPHENYL)OXOAMMONIUM / CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1Similarity search - Component |
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Biological species | ![](img/tx_mammal.gif) SUS SCROFA (pig) |
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Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 1.25 Å |
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Authors | Rao, F.V. / Rich, J.R. / Raikic, B. / Wakarchuk, W.W. / Withers, S.G. / Strynadka, N.C.J. |
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Citation | Journal: Nat.Struct.Mol.Biol. / Year: 2009 Title: Structural Insight Into Mammalian Sialyltransferases. Authors: Rao, F.V. / Rich, J.R. / Rakic, B. / Buddai, S. / Schwartz, M.F. / Johnson, K. / Bowe, C. / Wakarchuk, W.W. / Defrees, S. / Withers, S.G. / Strynadka, N.C.J. |
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History | Deposition | Jul 9, 2009 | Deposition site: PDBE / Processing site: PDBE |
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Revision 1.0 | Oct 13, 2009 | Provider: repository / Type: Initial release |
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Revision 1.1 | Jul 13, 2011 | Group: Advisory / Version format compliance |
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Revision 1.2 | Nov 16, 2011 | Group: Database references / Other |
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Revision 1.3 | May 20, 2015 | Group: Refinement description |
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Revision 2.0 | Jul 29, 2020 | Group: Atomic model / Data collection ...Atomic model / Data collection / Derived calculations / Other / Structure summary Category: atom_site / chem_comp ...atom_site / chem_comp / entity / entity_name_com / pdbx_branch_scheme / pdbx_chem_comp_identifier / pdbx_database_status / pdbx_entity_branch / pdbx_entity_branch_descriptor / pdbx_entity_branch_link / pdbx_entity_branch_list / pdbx_entity_nonpoly / pdbx_molecule_features / pdbx_nonpoly_scheme / pdbx_struct_assembly_gen / pdbx_struct_special_symmetry / struct_asym / struct_conn / struct_site / struct_site_gen Item: _atom_site.B_iso_or_equiv / _atom_site.Cartn_x ..._atom_site.B_iso_or_equiv / _atom_site.Cartn_x / _atom_site.Cartn_y / _atom_site.Cartn_z / _atom_site.auth_asym_id / _atom_site.auth_atom_id / _atom_site.auth_comp_id / _atom_site.auth_seq_id / _atom_site.label_asym_id / _atom_site.label_atom_id / _atom_site.label_comp_id / _atom_site.label_entity_id / _atom_site.type_symbol / _chem_comp.name / _chem_comp.type / _pdbx_database_status.status_code_sf / _pdbx_struct_assembly_gen.asym_id_list / _pdbx_struct_special_symmetry.label_asym_id / _struct_conn.pdbx_leaving_atom_flag / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id Description: Carbohydrate remediation / Provider: repository / Type: Remediation |
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Revision 2.1 | Dec 13, 2023 | Group: Data collection / Database references ...Data collection / Database references / Refinement description / Structure summary Category: chem_comp / chem_comp_atom ...chem_comp / chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model Item: _chem_comp.pdbx_synonyms / _database_2.pdbx_DOI / _database_2.pdbx_database_accession |
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