Entry Database : PDB / ID : 2wnb Structure visualization Downloads & linksTitle Crystal Structure of a Mammalian Sialyltransferase in complex with disaccharide and CMP ComponentsCMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 Details Keywords TRANSFERASE / GLYCOSYLTRANSFERASE / ALTERNATIVE SPLICING / DISULFIDE BOND / GOLGI APPARATUS / SIALYLTRANSFERASE / GLYCOPROTEIN / SIGNAL-ANCHOR / TRANSMEMBRANE / MEMBRANE / SECRETED / SIALIC ACIDFunction / homology Function and homology informationFunction Domain/homology Component
beta-D-galactosyl-(1->3)-N-acetyl-beta-D-galactosaminide alpha-2,3-sialyltransferase / beta-galactoside alpha-2,3-sialyltransferase / beta-galactoside (CMP) alpha-2,3-sialyltransferase activity / ganglioside biosynthetic process via lactosylceramide / beta-D-galactosyl-(1->3)-N-acetyl-beta-D-galactosaminide alpha-2,3- sialyltransferase / Golgi medial cisterna membrane / Golgi trans cisterna membrane / N-acetylneuraminate metabolic process / sialylation / protein N-linked glycosylation ... beta-D-galactosyl-(1->3)-N-acetyl-beta-D-galactosaminide alpha-2,3-sialyltransferase / beta-galactoside alpha-2,3-sialyltransferase / beta-galactoside (CMP) alpha-2,3-sialyltransferase activity / ganglioside biosynthetic process via lactosylceramide / beta-D-galactosyl-(1->3)-N-acetyl-beta-D-galactosaminide alpha-2,3- sialyltransferase / Golgi medial cisterna membrane / Golgi trans cisterna membrane / N-acetylneuraminate metabolic process / sialylation / protein N-linked glycosylation / protein glycosylation / trans-Golgi network membrane / extracellular region / membrane Similarity search - Function Glycosyl transferase family 29 / Glycosyl transferase family 29 / Sialyltransferase / GT29-like superfamiliy / Glycosyltransferase family 29 (sialyltransferase) / sialyltransferase cstii, chain A / Alpha-Beta Complex / Alpha Beta Similarity search - Domain/homology Thomsen-Friedenreich antigen / CYTIDINE-5'-MONOPHOSPHATE / HYDROXY(2-HYDROXYPHENYL)OXOAMMONIUM / CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 Similarity search - ComponentBiological species Sus scrofa (pig)Method X-RAY DIFFRACTION / MOLECULAR REPLACEMENT / Resolution : 1.55 Å DetailsAuthors Rao, F.V. / Rich, J.R. / Raikic, B. / Wakarchuk, W.W. / Withers, S.G. / Strynadka, N.C.J. CitationJournal : Nat.Struct.Mol.Biol. / Year : 2009Title : Structural Insight Into Mammalian Sialyltransferases.Authors : Rao, F.V. / Rich, J.R. / Rakic, B. / Buddai, S. / Schwartz, M.F. / Johnson, K. / Bowe, C. / Wakarchuk, W.W. / Defrees, S. / Withers, S.G. / Strynadka, N.C.J. History Deposition Jul 8, 2009 Deposition site : PDBE / Processing site : PDBERevision 1.0 Oct 13, 2009 Provider : repository / Type : Initial releaseRevision 1.1 Nov 16, 2011 Group : Database references / Derived calculations ... Database references / Derived calculations / Non-polymer description / Other / Refinement description / Version format compliance Revision 1.2 Jun 28, 2017 Group : Data collection / Category : diffrn_source / Item : _diffrn_source.typeRevision 2.0 Jul 29, 2020 Group : Advisory / Atomic model ... Advisory / Atomic model / Data collection / Derived calculations / Other / Structure summary Category : atom_site / chem_comp ... atom_site / chem_comp / database_PDB_caveat / entity / entity_name_com / pdbx_branch_scheme / pdbx_chem_comp_identifier / pdbx_database_status / pdbx_entity_branch / pdbx_entity_branch_descriptor / pdbx_entity_branch_link / pdbx_entity_branch_list / pdbx_entity_nonpoly / pdbx_molecule_features / pdbx_nonpoly_scheme / pdbx_struct_assembly_gen / struct_asym / struct_conn / struct_site / struct_site_gen Item : _atom_site.B_iso_or_equiv / _atom_site.Cartn_x ... _atom_site.B_iso_or_equiv / _atom_site.Cartn_x / _atom_site.Cartn_y / _atom_site.Cartn_z / _atom_site.auth_asym_id / _atom_site.auth_atom_id / _atom_site.auth_comp_id / _atom_site.auth_seq_id / _atom_site.label_asym_id / _atom_site.label_atom_id / _atom_site.label_comp_id / _atom_site.label_entity_id / _atom_site.type_symbol / _chem_comp.name / _chem_comp.type / _pdbx_database_status.status_code_sf / _pdbx_struct_assembly_gen.asym_id_list / _struct_conn.pdbx_leaving_atom_flag / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id Description : Carbohydrate remediation / Provider : repository / Type : RemediationRevision 3.0 Dec 13, 2023 Group : Advisory / Atomic model ... Advisory / Atomic model / Data collection / Database references / Derived calculations / Refinement description / Source and taxonomy / Structure summary Category : atom_site / chem_comp ... atom_site / chem_comp / chem_comp_atom / chem_comp_bond / database_2 / entity / entity_name_com / entity_src_gen / pdbx_distant_solvent_atoms / pdbx_initial_refinement_model / pdbx_nonpoly_scheme / pdbx_struct_mod_residue / pdbx_validate_close_contact / struct_conn / struct_ref Item : _atom_site.B_iso_or_equiv / _atom_site.Cartn_x ... _atom_site.B_iso_or_equiv / _atom_site.Cartn_x / _atom_site.Cartn_y / _atom_site.Cartn_z / _atom_site.auth_seq_id / _atom_site.occupancy / _chem_comp.pdbx_synonyms / _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _entity.pdbx_description / _entity.pdbx_ec / _entity_src_gen.gene_src_common_name / _entity_src_gen.pdbx_beg_seq_num / _entity_src_gen.pdbx_end_seq_num / _entity_src_gen.pdbx_gene_src_gene / _entity_src_gen.pdbx_gene_src_scientific_name / _entity_src_gen.pdbx_seq_type / _pdbx_distant_solvent_atoms.auth_seq_id / _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance / _pdbx_nonpoly_scheme.auth_seq_num / _pdbx_nonpoly_scheme.pdb_seq_num / _pdbx_struct_mod_residue.details / _pdbx_validate_close_contact.auth_seq_id_1 / _pdbx_validate_close_contact.auth_seq_id_2 / _struct_conn.ptnr1_auth_seq_id / _struct_ref.pdbx_align_begin / _struct_ref.pdbx_seq_one_letter_code
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