+Open data
-Basic information
Entry | Database: PDB / ID: 2vkc | ||||||
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Title | Solution structure of the B3BP Smr domain | ||||||
Components | NEDD4-BINDING PROTEIN 2 | ||||||
Keywords | HYDROLASE / HUMAN BCL3 BINDING PROTEIN / ALTERNATIVE SPLICING / HOMOLOGOUS RECOMBINATION / MISMATCH REPAIR / SMALL MUTS RELATED / NUCLEOTIDE-BINDING / ATP-BINDING / UBL CONJUGATION / PHOSPHORYLATION / SMR / B3BP / CYTOPLASM / COILED COIL | ||||||
Function / homology | Function and homology information ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity / Hydrolases / DNA endonuclease activity / ubiquitin binding / endonuclease activity / ATP binding / cytosol Similarity search - Function | ||||||
Biological species | HOMO SAPIENS (human) | ||||||
Method | SOLUTION NMR / CANDID,PROXIES | ||||||
Authors | Diercks, T. / Ab, E. / Daniels, M.A. / deJong, R.N. / Besseling, R. / Kaptein, R. / Folkers, G.E. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 2008 Title: Solution Structure and Characterization of the DNA- Binding Activity of the B3BP-Smr Domain. Authors: Diercks, T. / Ab, E. / Daniels, M.A. / De Jong, R.N. / Besseling, R. / Kaptein, R. / Folkers, G.E. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2vkc.cif.gz | 1 MB | Display | PDBx/mmCIF format |
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PDB format | pdb2vkc.ent.gz | 914.5 KB | Display | PDB format |
PDBx/mmJSON format | 2vkc.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/vk/2vkc ftp://data.pdbj.org/pub/pdb/validation_reports/vk/2vkc | HTTPS FTP |
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-Related structure data
Related structure data | |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 15189.629 Da / Num. of mol.: 1 / Fragment: RESIDUES 1666-1770 Source method: isolated from a genetically manipulated source Source: (gene. exp.) HOMO SAPIENS (human) / Production host: ESCHERICHIA COLI (E. coli) / References: UniProt: Q86UW6 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||
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NMR experiment |
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NMR details | Text: NONE |
-Sample preparation
Details | Contents: 95% WATER/5% D2O |
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Sample conditions | Ionic strength: 200 mM / pH: 6.0 / Pressure: 1.0 atm / Temperature: 308.0 K |
-NMR measurement
NMR spectrometer | Type: Bruker DMX / Manufacturer: Bruker / Model: DMX / Field strength: 700 MHz |
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-Processing
NMR software |
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Refinement | Method: CANDID,PROXIES / Software ordinal: 1 / Details: RECORD PROTOCOL | |||||||||
NMR ensemble | Conformer selection criteria: QUALITY / Conformers calculated total number: 250 / Conformers submitted total number: 28 |