Entry | Database: PDB / ID: 2v9d |
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Title | Crystal Structure of YagE, a prophage protein belonging to the dihydrodipicolinic acid synthase family from E. coli K12 |
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Components | YAGE |
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Keywords | LYASE / DIHYDRODIPICOLINIC ACID SYNTHASE / N-ACETYL NEURAMINATE LYASE / NAL / DHDPS / PROPHAGE |
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Function / homology | Function and homology information
2-dehydro-3-deoxy-D-pentonate aldolase / aldonic acid catabolic process / 2-dehydro-3-deoxy-D-pentonate aldolase activity / 2-dehydro-3-deoxy-D-gluconate aldolase / 2-dehydro-3-deoxy-D-gluconate aldolase activity / identical protein binding / cytosolSimilarity search - Function Schiff base-forming aldolase, conserved site / Dihydrodipicolinate synthase signature 1. / Schiff base-forming aldolase, active site / Dihydrodipicolinate synthase signature 2. / DapA-like / Dihydrodipicolinate synthetase family / Dihydrodipicolinate synthetase family / Aldolase class I / Aldolase-type TIM barrel / TIM Barrel ...Schiff base-forming aldolase, conserved site / Dihydrodipicolinate synthase signature 1. / Schiff base-forming aldolase, active site / Dihydrodipicolinate synthase signature 2. / DapA-like / Dihydrodipicolinate synthetase family / Dihydrodipicolinate synthetase family / Aldolase class I / Aldolase-type TIM barrel / TIM Barrel / Alpha-Beta Barrel / Alpha BetaSimilarity search - Domain/homology |
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Biological species | ![](img/tx_bacteria.gif) ESCHERICHIA COLI (E. coli) |
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Method | X-RAY DIFFRACTION / SYNCHROTRON / MAD / Resolution: 2.15 Å |
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Authors | Manicka, S. / Peleg, Y. / Unger, T. / Albeck, S. / Dym, O. / Greenblatt, H.M. / Bourenkov, G. / Lamzin, V. / Krishnaswamy, S. / Sussman, J.L. |
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Citation | Journal: Proteins: Struct., Funct., Bioinf. / Year: 2008 Title: Crystal Structure of Yage, a Putative Dhdps Like Protein from Escherichia Coli K12. Authors: Manicka, S. / Peleg, Y. / Unger, T. / Albeck, S. / Dym, O. / Greenblatt, H.M. / Bourenkov, G. / Lamzin, V. / Krishnaswamy, S. / Sussman, J.L. |
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History | Deposition | Aug 23, 2007 | Deposition site: PDBE / Processing site: PDBE |
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Revision 1.0 | Mar 4, 2008 | Provider: repository / Type: Initial release |
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Revision 1.1 | May 8, 2011 | Group: Version format compliance |
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Revision 1.2 | Jul 13, 2011 | Group: Version format compliance |
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Revision 1.3 | Nov 6, 2019 | Group: Data collection / Derived calculations ...Data collection / Derived calculations / Other / Refinement description Category: pdbx_database_status / software / struct_conn Item: _pdbx_database_status.status_code_sf / _struct_conn.pdbx_leaving_atom_flag |
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