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- PDB-2qfw: Crystal structure of Saccharomyces cerevesiae mitochondrial NADP(... -

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データを開く


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基本情報

登録情報
データベース: PDB / ID: 2qfw
タイトルCrystal structure of Saccharomyces cerevesiae mitochondrial NADP(+)-dependent isocitrate dehydrogenase in complex with isocitrate
要素Isocitrate dehydrogenase [NADP]
キーワードOXIDOREDUCTASE / Rossmann fold
機能・相同性
機能・相同性情報


NADPH regeneration / Peroxisomal protein import / isocitrate metabolic process / glutamate biosynthetic process / isocitrate dehydrogenase (NADP+) / isocitrate dehydrogenase (NADP+) activity / NADP+ metabolic process / glyoxylate cycle / mitochondrial nucleoid / tricarboxylic acid cycle ...NADPH regeneration / Peroxisomal protein import / isocitrate metabolic process / glutamate biosynthetic process / isocitrate dehydrogenase (NADP+) / isocitrate dehydrogenase (NADP+) activity / NADP+ metabolic process / glyoxylate cycle / mitochondrial nucleoid / tricarboxylic acid cycle / Neutrophil degranulation / NAD binding / magnesium ion binding / mitochondrion
類似検索 - 分子機能
Isocitrate dehydrogenase NADP-dependent / Isopropylmalate Dehydrogenase / Isopropylmalate Dehydrogenase / Isocitrate/isopropylmalate dehydrogenase, conserved site / Isocitrate and isopropylmalate dehydrogenases signature. / Isopropylmalate dehydrogenase-like domain / Isocitrate/isopropylmalate dehydrogenase / Isocitrate/isopropylmalate dehydrogenase / 3-Layer(aba) Sandwich / Alpha Beta
類似検索 - ドメイン・相同性
ISOCITRIC ACID / Isocitrate dehydrogenase [NADP], mitochondrial
類似検索 - 構成要素
生物種Saccharomyces cerevisiae (パン酵母)
手法X線回折 / 分子置換 / 解像度: 2.6 Å
データ登録者Peng, Y.J. / Ding, J.P.
引用ジャーナル: Protein Sci. / : 2008
タイトル: Structural studies of Saccharomyces cerevesiae mitochondrial NADP-dependent isocitrate dehydrogenase in different enzymatic states reveal substantial conformational changes during the catalytic reaction
著者: Peng, Y.J. / Zhong, C. / Huang, W. / Ding, J.P.
履歴
登録2007年6月28日登録サイト: RCSB / 処理サイト: PDBJ
改定 1.02008年7月1日Provider: repository / タイプ: Initial release
改定 1.12011年7月13日Group: Advisory / Version format compliance
改定 1.22023年10月25日Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Refinement description
カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / struct_ref_seq_dif / struct_site
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_ref_seq_dif.details / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id

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構造の表示

構造ビューア分子:
MolmilJmol/JSmol

ダウンロードとリンク

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集合体

登録構造単位
A: Isocitrate dehydrogenase [NADP]
B: Isocitrate dehydrogenase [NADP]
C: Isocitrate dehydrogenase [NADP]
D: Isocitrate dehydrogenase [NADP]
E: Isocitrate dehydrogenase [NADP]
F: Isocitrate dehydrogenase [NADP]
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)290,01112
ポリマ-288,8596
非ポリマー1,1536
20,8611158
1
A: Isocitrate dehydrogenase [NADP]
B: Isocitrate dehydrogenase [NADP]
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)96,6704
ポリマ-96,2862
非ポリマー3842
362
タイプ名称対称操作
identity operation1_555x,y,z1
Buried area7940 Å2
ΔGint-49 kcal/mol
Surface area32400 Å2
手法PISA
2
C: Isocitrate dehydrogenase [NADP]
D: Isocitrate dehydrogenase [NADP]
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)96,6704
ポリマ-96,2862
非ポリマー3842
362
タイプ名称対称操作
identity operation1_555x,y,z1
Buried area7780 Å2
ΔGint-51 kcal/mol
Surface area33270 Å2
手法PISA
3
E: Isocitrate dehydrogenase [NADP]
F: Isocitrate dehydrogenase [NADP]
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)96,6704
ポリマ-96,2862
非ポリマー3842
362
タイプ名称対称操作
identity operation1_555x,y,z1
Buried area7860 Å2
ΔGint-50 kcal/mol
Surface area32730 Å2
手法PISA
単位格子
Length a, b, c (Å)74.699, 97.886, 190.651
Angle α, β, γ (deg.)90.000, 98.950, 90.000
Int Tables number4
Space group name H-MP1211

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要素

#1: タンパク質
Isocitrate dehydrogenase [NADP] / Idp1p / Oxalosuccinate decarboxylase / IDH / NADP+ / -specific ICDH / IDP


分子量: 48143.086 Da / 分子数: 6 / 由来タイプ: 組換発現
由来: (組換発現) Saccharomyces cerevisiae (パン酵母)
: YPH499 / 遺伝子: IDP1 / プラスミド: pET-3E-His / 発現宿主: Escherichia coli (大腸菌) / 株 (発現宿主): BL21 (DE3) pLysS / 参照: UniProt: P21954, isocitrate dehydrogenase (NADP+)
#2: 化合物
ChemComp-ICT / ISOCITRIC ACID / D-イソくえん酸


分子量: 192.124 Da / 分子数: 6 / 由来タイプ: 合成 / : C6H8O7
#3: 水 ChemComp-HOH / water


分子量: 18.015 Da / 分子数: 1158 / 由来タイプ: 天然 / : H2O

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実験情報

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実験

実験手法: X線回折 / 使用した結晶の数: 1

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試料調製

結晶マシュー密度: 2.38 Å3/Da / 溶媒含有率: 48.38 %
結晶化温度: 293 K / 手法: 蒸気拡散法, ハンギングドロップ法 / pH: 7.2
詳細: 0.1M HEPES-Na, 0.2M Li2SO4, 0.1M NaF, 20% PEG 4000, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K

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データ収集

回折平均測定温度: 95 K
放射光源由来: 回転陽極 / タイプ: RIGAKU RUH3R / 波長: 1.5418 Å
検出器タイプ: RIGAKU RAXIS IV++ / 検出器: IMAGE PLATE / 日付: 2005年8月22日 / 詳細: MSC confocal max-flux optics
放射プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長波長: 1.5418 Å / 相対比: 1
反射解像度: 2.6→19.9 Å / Num. obs: 82166 / % possible obs: 98.4 % / 冗長度: 2.62 % / Biso Wilson estimate: 64.9 Å2 / Rmerge(I) obs: 0.06 / Rsym value: 0.06 / Χ2: 1.06 / Net I/σ(I): 9 / Scaling rejects: 11366
反射 シェル解像度: 2.6→2.69 Å / 冗長度: 2.66 % / Rmerge(I) obs: 0.228 / Mean I/σ(I) obs: 2 / Num. measured all: 22349 / Num. unique all: 8296 / Rsym value: 0.06 / Χ2: 0.59 / % possible all: 99.9

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位相決定

Phasing MRCor.coef. Fo:Fc: 0.641 / Packing: 0.595
最高解像度最低解像度手法Reflection percentσ(F)
Translation4 Å10 Ågeneral96.5 2

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解析

ソフトウェア
名称バージョン分類NB
d*TREK7.1SSIデータスケーリング
CNS精密化
REFMAC精密化
PDB_EXTRACT2データ抽出
CrystalClearデータ収集
CrystalClearデータ削減
CNS位相決定
精密化構造決定の手法: 分子置換
開始モデル: 1LWD
解像度: 2.6→20 Å / Cor.coef. Fo:Fc: 0.931 / Cor.coef. Fo:Fc free: 0.887 / SU B: 14.637 / SU ML: 0.299 / TLS residual ADP flag: LIKELY RESIDUAL / 交差検証法: THROUGHOUT / σ(F): 0 / ESU R Free: 0.401 / 立体化学のターゲット値: MAXIMUM LIKELIHOOD
Rfactor反射数%反射Selection details
Rfree0.292 4154 5.1 %RANDOM
Rwork0.232 ---
obs0.235 82147 98.38 %-
溶媒の処理イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.4 Å / 溶媒モデル: BABINET MODEL WITH MASK
原子変位パラメータBiso mean: 51.646 Å2
Baniso -1Baniso -2Baniso -3
1-1.39 Å20 Å2-2.13 Å2
2---0.79 Å20 Å2
3----1.25 Å2
Refine analyze
FreeObs
Luzzati coordinate error0.52 Å0.42 Å
Luzzati d res low-5 Å
Luzzati sigma a0.57 Å0.44 Å
精密化ステップサイクル: LAST / 解像度: 2.6→20 Å
タンパク質核酸リガンド溶媒全体
原子数19452 0 78 1158 20688
拘束条件
Refine-IDタイプDev idealDev ideal target
X-RAY DIFFRACTIONr_bond_refined_d0.0050.02219904
X-RAY DIFFRACTIONr_angle_refined_deg0.891.96926847
X-RAY DIFFRACTIONr_dihedral_angle_1_deg3.94152451
X-RAY DIFFRACTIONr_chiral_restr0.0590.22994
X-RAY DIFFRACTIONr_gen_planes_refined0.0020.0214708
X-RAY DIFFRACTIONr_nbd_refined0.1870.210316
X-RAY DIFFRACTIONr_xyhbond_nbd_refined0.1070.21455
X-RAY DIFFRACTIONr_symmetry_vdw_refined0.1590.283
X-RAY DIFFRACTIONr_symmetry_hbond_refined0.0990.221
X-RAY DIFFRACTIONr_mcbond_it0.6931.512213
X-RAY DIFFRACTIONr_mcangle_it1.319219760
X-RAY DIFFRACTIONr_scbond_it1.19237691
X-RAY DIFFRACTIONr_scangle_it2.1664.57087
LS精密化 シェル解像度: 2.6→2.666 Å / Total num. of bins used: 20 /
Rfactor反射数
Rfree0.403 307
Rwork0.349 5778
obs-6085
精密化 TLS

手法: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
13.56830.227-0.27440.8967-0.29281.59120.0525-0.29480.20420.05370.0771-0.08380.07640.0832-0.12960.11970.0011-0.03510.08380.00020.088360.0167-49.141170.8646
21.14441.51350.16192.9826-0.41980.86050.05170.03990.09520.1364-0.0147-0.0451-0.1422-0.1777-0.0370.11470.0042-0.02510.08170.01740.095859.9395-40.505170.9534
36.28710.65540.53070.4605-0.83580.45230.0908-0.0199-0.23440.08570.0755-0.05050.1208-0.1103-0.16630.1295-0.0245-0.04340.10140.00240.073355.7238-47.653574.7499
41.89540.8228-1.12791.6193-1.19423.2873-0.0471-0.09390.09170.19110.11490.06220.1112-0.2536-0.06780.1209-0.00350.00540.07450.00960.08359.862-43.459985.1407
52.2379-1.22130.12841.22460.26643.3740.10830.0179-0.16230.1064-0.092-0.21680.0795-0.4752-0.01630.07450.01040.02610.0564-0.02760.069473.527-57.845382.3822
61.1171-1.1688-0.90643.14881.38380.23420.20620.07320.00160.1677-0.14070.27410.04750.111-0.06550.1088-0.00370.03230.1172-0.01520.063970.9395-48.033591.7319
71.23240.19-0.30480.00010.24561.31320.00520.21460.2047-0.01160.09470.0991-0.04890.1854-0.09980.11590.0196-0.0260.10910.01990.107783.1706-23.85987.7036
87.4425-3.8714-1.7005-0.8219-5.5938-1.02590.30840.85910.22350.0924-0.80090.28170.4642-0.05770.49260.1110.0258-0.01990.1080.03140.133984.5911-26.136889.9469
9-4.12270.8824-0.83845.9337-0.7317-0.4470.25690.1394-0.51860.3115-0.1516-0.32960.0655-0.22-0.10540.10930.0314-0.01910.09390.00890.093366.7907-33.021998.1351
101.3341-0.2061.93894.4252.66474.92450.01290.07870.0810.18080.21470.07530.12670.1563-0.22760.0997-0.0108-0.00330.0733-0.0030.060464.9303-53.702698.7947
116.44265.10621.27254.58030.7175-2.42780.3195-0.1561-0.15610.298-0.1411-0.36050.0947-0.3303-0.17840.13720.0435-0.00350.0802-0.03740.0872.2537-42.0665104.4629
121.2652.3142-0.59870.7766-0.92312.79140.3275-0.3014-0.44860.187-0.29830.3822-0.03940.2016-0.02930.0848-0.001-0.01680.0739-0.00580.075463.3523-58.0265100.5845
1324.553417.6346-3.763213.18740.03682.55040.25570.15671.02620.34450.20770.9516-0.24020.5616-0.46340.09090.022-0.00630.1589-0.01440.060875.9379-44.127103.9288
143.1945-2.84543.44714.3881.39071.8566-0.07390.24210.3179-0.0071-0.4448-0.2584-0.17210.57450.51870.06150.00650.00650.0956-0.00480.105478.4419-49.484591.8277
150.7004-0.58820.2764-0.65660.1099-0.1833-0.0444-0.1339-0.0519-0.26490.07020.16210.05760.0301-0.02580.07520.0068-0.01270.0979-0.00690.13969.0559-53.911199.8272
16-0.53831.56291.3370.98970.00651.667-0.0506-0.29370.269-0.13680.2766-0.1340.1325-0.1364-0.2260.1274-0.013-0.03780.0853-0.01360.093560.0872-52.311183.725
1713.0459-5.3007-10.961311.01957.646727.32180.25551.0971-0.4963-0.4113-0.8023-0.1190.7293-1.52070.54680.06330.00460.00050.06720.00950.074677.1674-51.925459.7355
183.0753-1.0822-0.34130.9912-0.53990.42260.08-0.18610.21830.08970.0756-0.04230.1865-0.146-0.15560.1476-0.0244-0.04220.1073-0.01220.073754.0543-53.013477.4336
193.5074-2.25440.25114.475-1.11122.04230.25780.1108-0.5983-0.33390.09930.5020.1678-0.2731-0.35720.17460.0347-0.01290.0799-0.02050.088966.5815-66.062165.4029
2036.623311.3417-5.09825.1677-0.670817.89720.2611.4577-0.26170.151-0.0698-0.8811-0.51531.4506-0.19130.1420.0392-0.00610.1009-0.03730.102669.6078-66.797462.213
213.5022-0.3572-0.30511.86110.28050.4644-0.13750.1770.08560.03010.00710.16040.01250.08710.13050.11050.0165-0.02210.08190.0010.06798.582-46.8596114.3075
2210.18650.3066-6.62161.08780.92264.28310.0165-1.093-0.3302-0.1274-0.0288-0.2031-0.14280.59050.01230.15080.0131-0.03390.1235-0.00690.0721103.6364-39.0441116.8343
235.51451.3129-0.98463.60480.7757-0.288-0.25070.3028-0.4029-0.0670.1934-0.1532-0.06540.06690.05720.13770.0119-0.04520.1106-0.01490.070798.9896-43.8617109.3093
24-0.6715-0.5585-0.12756.4658-4.50127.8653-0.01240.0404-0.3426-0.6793-0.0766-0.182-0.6038-0.32880.0890.08740.03480.03120.2454-0.13320.306278.5918-28.1875100.1307
251.7607-0.1503-1.0603-0.02180.30920.38480.01750.08170.19320.01590.0480.11060.0014-0.125-0.06540.1188-0.0118-0.00020.0832-0.01230.091694.881-35.8622105.0029
260.6788-0.21880.3347-0.0898-0.36990.79-0.0229-0.01640.1319-0.03420.0385-0.0497-0.04050.0026-0.01560.11680.00720.02280.0038-0.01460.080879.9942-41.8784100.8459
277.18783.8618-2.07214.39130.02120.52990.1597-0.2864-0.12260.2474-0.39380.20790.08380.01790.23410.12280.02030.02060.0602-0.02350.079465.4873-30.656399.0712
287.279-3.7816-3.67112.18861.79441.2881-0.3623-0.87070.06670.23820.47790.05820.30370.661-0.11560.1203-0.00790.02390.0746-0.01250.107566.5488-19.7145110.4682
292.351-0.6711.2162-0.0012-0.1140.75220.2252-0.49840.07760.1002-0.08240.07430.0642-0.2614-0.14280.2126-0.0918-0.00650.1352-0.03410.162678.8975-41.363898.2506
306.8282-0.7028-1.51440.88542.1861-1.98390.0899-0.5637-0.2415-0.2463-0.0232-0.1405-0.1625-0.1212-0.06670.1291-0.006-0.00510.0695-0.0170.103188.9498-33.885691.8956
314.9399-0.4493-1.89881.8807-5.87562.9420.03330.2688-0.0720.00010.1317-0.0334-0.59-0.2414-0.1650.0780.009-0.00730.0651-0.00810.072895.647-33.902584.7257
323.57530.7461-1.52752.1025-0.60630.78230.0204-0.3547-0.28950.20450.00760.1598-0.02360.2766-0.0280.12080.0539-0.0160.08880.01030.093486.8593-52.351394.0165
330.85920.14110.1052-1.39860.2217-0.087-0.03970.21450.14980.30210.240.15020.0527-0.0639-0.20020.09510.0032-0.02070.0997-0.04450.1136100.1011-40.836274.6031
345.08497.4449-0.804430.6038-6.96320.643-0.1132-0.22780.3272-0.0177-0.0133-0.49450.03360.04240.12650.07640.0192-0.00040.0933-0.00060.058899.6815-42.1584102.1069
355.95786.807-7.028410.0585-8.36578.15450.15690.49010.121-0.12470.0651-0.1745-0.223-0.2566-0.22210.16940.1037-0.10070.2422-0.05760.1699111.0863-27.431891.0484
361.0439-5.0355-3.88660.4031-1.566116.18630.32710.43720.06310.2888-0.55760.02120.2790.27140.23060.09350.0168-0.04890.0944-0.02390.125994.4205-61.6276113.9825
372.10181.739-2.30112.0279-0.29590.0099-0.3157-0.1464-0.38650.1875-0.3452-0.4874-0.02230.30240.66090.11840.04950.00850.1106-0.00220.131598.9893-58.4684118.0542
38-0.17092.3313-2.172420.7318-3.57111.39580.09330.3982-0.26431.4233-0.7658-0.3321-0.06110.64690.67250.08840.0571-0.00530.2045-0.08730.2354112.8925-61.5582115.349
390.90532.52650.70334.98761.33350.82480.1045-0.0149-0.14290.0461-0.0465-0.27330.21090.0868-0.0580.10210.0583-0.01860.08010.00390.0678104.1052-58.6858108.3654
402.46433.70960.02284.27450.0530.55830.27480.1596-0.23430.306-0.29-0.08570.0948-0.04840.01520.14770.09260.00350.11220.0030.08598.7826-67.7041112.54
412.18530.8417-0.3875-0.808-0.29232.16380.0676-0.1334-0.2052-0.3333-0.21420.13260.0670.46950.14660.09580.0211-0.0090.11970.00540.0707102.9664-38.9126133.3018
420.5577-0.04322.7075-0.1305-0.93253.4360.0685-0.0971-0.0483-0.2188-0.0959-0.0808-0.1117-0.5750.02730.08550.0271-0.00530.0832-0.01940.100394.6713-35.9628140.1631
432.6964-0.99111.02392.60631.0611-1.1714-0.32710.52150.4894-0.40530.3907-0.18850.1236-0.03-0.06360.15430.0144-0.03860.17040.0150.0795117.6038-34.1204125.2723
441.7188-1.5845-0.34465.5753-0.02641.1043-0.1333-0.0096-0.109-0.15990.10340.50830.1601-0.03030.02990.11420.0035-0.08110.1002-0.00870.0848105.1154-42.1578132.798
45-6.15437.6649-5.937132.9005-14.409325.17140.796-0.4912-1.26980.266-0.6444-0.71950.14751.7461-0.15150.08780.0122-0.01030.0632-0.00620.0814113.4025-56.9642133.1457
460.12570.2940.3106-0.1412-0.1991-0.2802-0.0975-0.09650.10260.03470.0383-0.1362-0.00360.04080.05920.15540.0466-0.02490.1022-0.00630.0817104.9348-40.3501140.6232
472.3326-0.3349-1.38272.4066-0.43123.44210.0660.27490.3125-0.3735-0.0847-0.1703-0.3051-0.01870.01870.14490.0156-0.09060.0704-0.01280.1434112.4757-31.7023146.2326
481.2046-0.7090.05834.422-1.00160.8855-0.04140.191-0.26390.1226-0.01580.5063-0.04070.11730.05720.06130.02720.02380.08360.00040.0645127.244-50.7388147.7796
494.09542.5812-0.2406-1.31730.36683.6651-0.40190.32240.07540.13610.294-0.232-0.17670.55650.10790.1551-0.0661-0.03940.1117-0.00830.1112124.2838-26.6388147.5458
501.3651-0.2538-0.93552.6788-0.05930.6598-0.4420.09330.1359-0.14120.1065-0.41080.10120.09630.33550.106-0.06640.02560.11540.00390.0626123.9348-33.8859151.8046
512.12870.8822-3.0862-3.0603-3.12841.1355-1.0278-0.3334-0.10410.3451-0.11020.1-0.01560.36591.1380.0896-0.0444-0.00210.14910.01010.1114123.1076-28.1343153.3479
5214.39840.0728-7.6439-1.8471-1.8866.4198-0.84220.7689-1.30330.1497-0.49910.46110.40890.02331.34130.0953-0.0552-0.04180.150.0580.1292129.4351-38.3403151.0802
530.32190.1971-0.1231.03860.10242.2292-0.0969-0.00490.0717-0.15430.0384-0.183-0.18730.11070.05840.1764-0.0021-0.07370.10270.0120.1034118.8602-35.6004150.21
542.9669-2.40492.8462-5.02886.5658-3.1736-0.2075-0.06280.3207-0.24580.0704-0.09050.36680.32740.13720.11350.0556-0.08670.121-0.00270.1136109.9149-27.9186141.5385
5519.66137.0321-10.650517.14470.784412.6759-0.89281.75480.3243-0.44051.07810.37180.5105-1.1948-0.18530.08890.01270.01770.0712-0.00970.07891.1828-53.3423137.4545
560.5977-0.2811-1.83665.519-1.88480.57290.00650.08590.19780.29980.183-0.12670.0643-0.1764-0.18950.08170.0348-0.05190.1075-0.01340.103297.3578-33.5729138.7115
571.56852.4867-2.16712.0383-1.24312.7238-0.13520.00470.0995-0.02050.09720.124-0.2486-0.24730.03810.12440.041-0.04080.0853-0.0260.108792.2632-27.4434138.9997
582.15641.20022.4703-7.2575-0.2215.2715-0.2134-0.64521.15670.09520.0808-1.1053-0.0372-0.96440.13270.1368-0.0450.07440.1302-0.07010.148274.9469-28.5294147.1194
594.44230.3399-0.0263.23360.60710.7584-0.00360.35490.55360.0950.1743-0.4689-0.1374-0.1738-0.17070.15620.071-0.07810.1497-0.13550.283691.9962-38.9578138.914
607.65053.72553.0638.4311-2.71114.43710.2158-0.4468-1.0668-0.217-0.18-0.32780.1982-0.5682-0.03580.0786-0.03730.02040.1884-0.01570.094484.7211-36.5367144.1242
612.4944-0.4743-3.37435.2327-4.56480.97330.4182-0.2460.1815-0.3988-0.1929-0.54090.5089-0.2039-0.22530.10730.0148-0.06250.1434-0.05820.1565138.1853-50.386180.2916
621.90541.83211.75912.024-4.78294.02480.3929-0.3683-0.2671-0.4517-0.3093-0.30810.1931-0.0495-0.08350.07170.0012-0.04520.1575-0.01460.05129.7416-49.3132189.4451
632.45152.8877-1.23050.82680.9552-1.1693-0.19810.26060.40860.0655-0.09310.2001-0.27160.29560.29120.10410.0585-0.040.1372-0.03810.0855130.1194-48.0433179.6151
641.317-1.394-1.26566.2311-3.73512.6713-0.2962-0.1739-0.13830.19880.50780.7734-0.14820.2876-0.21160.0991-0.0038-0.03060.10780.00030.0754132.7678-49.6129180.2558
6525.52549.21719.1998-1.7574.823614.2642-0.01670.72970.05310.4433-0.5337-0.7187-0.1724-1.31560.55040.2045-0.01420.02320.15910.05640.0979127.4126-32.7596163.3657
660.11060.98260.8516-0.9658-0.43720.6602-0.03240.15120.02830.00780.066-0.03620.10940.0169-0.03350.1401-0.0178-0.05120.1163-0.010.0954129.9983-53.8594168.6897
67-0.0863-1.44532.45041.79361.0014-0.8839-0.01020.33990.81-0.3850.08-0.39350.04780.1493-0.06980.24260.1104-0.0770.17210.06350.3511118.3514-43.2553157.0764
680.47960.3375-1.91610.8005-2.64023.20620.00360.10590.09340.25070.00450.0829-0.23550.0025-0.00810.1264-0.0201-0.02130.0967-0.04430.0895123.6573-47.1956162.0071
692.4916-2.8619-1.38545.20211.169-0.27010.0635-0.14470.1001-0.2298-0.2213-0.329-0.02280.19220.15780.0738-0.0341-0.00240.13740.00420.0647136.7096-42.9415141.2842
702.01941.2217-0.7445-2.3111.8632-1.52350.0542-0.0688-0.1118-0.1223-0.6165-0.18860.03850.58030.56230.0714-0.01580.00210.0844-0.01670.0953129.7223-45.6768150.2081
7111.08565.7556-7.575911.4275-2.92086.3740.1031-0.80510.1894-0.662-0.0146-0.41750.06380.7016-0.08840.09410.021-0.03080.1194-0.03450.0858133.0528-54.3035153.1871
721.9954-2.51482.58081.09063.353814.5206-0.33570.0157-0.0556-0.17710.082-0.0253-0.64250.65810.25370.0744-0.0056-0.01490.0789-0.00280.0849123.809-60.6715159.4746
730.8361-0.220.31761.4207-1.01871.966-0.02290.00810.0492-0.12450.02790.12510.2173-0.1161-0.0050.08660.0165-0.04820.0746-0.0230.1198115.3529-50.2955154.6875
740.58190.3882-0.61120.8697-0.69543.2167-0.0186-0.0627-0.027-0.2047-0.0169-0.0678-0.42470.63330.03550.2197-0.06350.00980.1919-0.04210.097134.0935-47.4782143.7121
755.94741.5377-4.14051.9599-1.677420.46230.0110.08390.4928-0.1715-0.01630.4232-0.95170.50470.00540.08840.0298-0.02750.0739-0.02280.0893109.1747-45.0025161.0741
76-0.5876-0.75680.34131.1416-0.220.16010.178-0.2434-0.038-0.0342-0.19590.0307-0.0219-0.07630.01790.10150.0252-0.0220.0957-0.00060.0965111.5744-55.8803160.537
776.07340.2529-4.0149-2.88962.17523.94360.6422-0.47480.2076-0.5033-0.136-0.0722-0.20390.3406-0.50610.1097-0.04670.00060.12810.02690.1014127.1813-51.4563176.1451
780.2170.65110.001824.79748.18913.1330.0355-0.1614-0.1875-0.1875-0.24190.38810.2745-0.28170.20640.2414-0.0538-0.05870.46040.17720.145127.8415-79.3484165.3636
791.4956-0.88120.28050.88-0.24780.33250.1373-0.1468-0.01460.0436-0.205-0.13290.0543-0.18380.06760.09170.0107-0.02460.12620.00160.0663125.182-51.7461182.4143
801.0544-0.3308-2.11771.09730.60970.9144-0.2566-0.40070.25530.07110.034-0.3346-0.1267-0.39030.22260.0799-0.03830.02840.1655-0.04010.1119117.4062-41.2066187.9513
811.0847-0.6325-1.33681.8089-0.53461.9914-0.17430.1011-0.26330.1770.14470.19140.06890.04180.02970.1096-0.037-0.05810.13290.03240.1421147.8836-48.4761194.6334
827.70182.4919-0.6413-0.82910.63693.1183-0.0059-0.17920.8202-0.54790.32240.6686-0.2632-0.2138-0.31650.10210.0124-0.05080.11930.00810.1083150.2999-39.3029184.2233
833.0099-2.1293-2.3442.53210.7163.69120.3959-0.22750.1931-0.1015-0.157-0.5566-0.1530.0625-0.23890.1011-0.0407-0.03530.1220.0140.0763152.7625-46.5021192.5044
8413.3059-6.55914.64116.9615-3.2078.9651-0.121-0.2082-0.68760.5655-0.0251-0.3670.80170.86580.14610.2372-0.0690.08910.3026-0.05030.1049147.6724-51.8716212.1342
858.4194-2.641-3.1594-0.3443-0.15130.17040.1971-0.417-0.1899-0.1347-0.24320.0780.0316-0.22240.04610.1331-0.0349-0.03440.08990.01790.0743155.3512-51.9936200.2914
868.55677.66660.573617.79962.90684.13110.47510.00250.07520.9849-0.95111.5036-0.5022-0.95720.4760.17340.08960.00850.253-0.06740.1071156.6819-40.8442200.1238
877.0399-7.1120.619420.18333.66045.23390.1743-1.27940.4535-0.3083-0.02651.1522-0.9978-0.1491-0.14780.1244-0.0518-0.0310.1212-0.00960.1254163.8449-22.3184211.3191
881.54590.7817-0.52390.4038-0.20611.7583-0.1110.2789-0.0853-0.21790.0550.09760.0655-0.090.05590.1111-0.02680.00870.11260.03590.0607161.5115-47.651206.2002
890.2822.82931.700516.2740.76545.99730.1559-0.25020.4264-0.8328-0.50080.6668-0.15-0.4470.3450.0983-0.0578-0.01950.14840.00020.1214150.5511-65.7089217.9951
90-0.60990.7198-0.85034.23231.29330.69210.0299-0.2027-0.0255-0.4328-0.04820.4307-0.1282-0.37140.01840.1178-0.0504-0.0430.1543-0.01350.1464146.0348-46.0055224.4448
914.14751.719-0.70.3827-1.19771.34390.0649-0.1317-0.1317-0.08080.06260.0069-0.0465-0.0655-0.12760.0901-0.0203-0.0180.09090.01750.0959159.7249-56.4694213.4124
920.89340.4379-3.77111.73382.83418.55970.1644-0.03290.1403-0.0831-0.13750.1961-0.2254-0.0198-0.02690.0833-0.0138-0.04090.09350.04780.116167.0475-51.5388218.8873
9328.25782.8735-8.0212-7.3266-4.56159.48330.05381.4433-0.3372-0.09670.5984-1.08540.2084-1.0449-0.65220.08420.00450.00740.0585-0.00160.0753168.889-60.8039204.1988
941.1864-1.05110.35491.13740.42520.9816-0.3254-0.0763-0.27630.12430.0780.1518-0.249-0.08550.24740.1555-0.0385-0.02260.11490.03890.0884161.29-40.7441213.9467
952.89032.9945-2.66321.669-2.2342-1.3587-0.3980.2134-0.3254-0.548-0.1201-0.2879-0.37030.29030.51810.0730.0133-0.01470.117-0.03620.0841159.6577-47.2951212.0139
96-0.656414.02892.17499.0108-1.6584.1465-0.81140.27630.05860.31861.08780.61670.21540.4919-0.27640.06770.005-0.0070.14060.00620.072162.2283-46.8399196.1349
9710.2922-13.4914-0.038222.26180.73350.62040.0653-0.3134-0.33230.12160.037-0.79920.13490.0453-0.10230.1874-0.1661-0.01990.29350.07610.1982165.0762-57.5832196.7071
98-0.0530.8676-0.14840.4198-0.6846-0.069-0.05360.2469-0.0122-0.1234-0.0405-0.0535-0.25140.06640.09410.1043-0.0707-0.03130.15820.03280.0735154.7848-41.926189.3134
994.0677-5.3721-0.331710.25572.998713.4271-0.26820.6984-0.47080.0219-0.49910.6781-1.2542-1.3670.76730.1141-0.00720.00010.06160.01750.1112156.4736-22.7927189.6568
1001.36590.43593.01954.1692.75363.60850.08140.22030.3476-0.6867-0.70380.5973-1.1424-0.42380.62240.1239-0.012-0.04350.14430.08680.165155.9161-26.1424186.9043
1011.98180.2010.11491.45050.49920.58870.08430.0485-0.2445-0.1267-0.15280.1274-0.0313-0.1530.06850.1121-0.0113-0.03960.10530.010.0845173.8245-40.8382244.8155
102-0.85615.1696-0.477.56291.33184.3552-0.2513-0.0362-0.222-0.45380.30260.10370.0201-0.088-0.05140.08210.00440.0230.0883-0.01330.0861180.0264-30.8303239.1838
1032.94991.77390.90420.65942.70781.1498-0.00650.2494-0.14230.40850.2407-0.17530.01320.3024-0.23410.10760.0027-0.06020.1276-0.0160.113178.8967-36.1111246.5378
104-0.00850.00210.51973.25260.84620.9188-0.28230.15650.0313-0.65370.0579-0.2911-0.3010.07340.22440.2054-0.0529-0.10260.10480.08950.1484174.296-20.3994235.7709
1056.3374-4.6584-2.10536.81362.6185-0.162-0.1176-0.55710.48490.68760.21130.24220.45940.2627-0.09370.2691-0.11920.03040.158-0.0060.1532158.7096-40.6543246.297
1066.19313.1752-3.59730.9401-1.70773.1119-0.67450.0155-0.6901-0.40910.0621-0.63470.3555-0.26690.61240.11290.0252-0.02040.0896-0.02470.1039154.4776-43.2063241.7926
10721.31811.3802-2.92844.16020.920114.88070.04461.0251-1.266-0.4329-0.207-1.06-0.00140.98970.16240.1077-0.03450.00890.10940.03810.1214172.589-29.7946210.4512
108-0.06360.2950.2443-0.5981-0.2131.0442-0.0201-0.0712-0.04950.0630.02530.1261-0.0567-0.0471-0.00520.092-0.0383-0.02330.06790.00190.0885160.1738-42.3949225.3067
10911.0145-5.4865-12.63284.60644.394415.18860.85170.13110.8796-0.9078-0.0305-0.2692-0.1259-0.2221-0.82120.1626-0.0158-0.09510.1440.04140.1379152.5947-61.2424213.4109
1100.8066-2.0736-5.15813.4926.008710.9405-0.0687-0.0848-0.35370.20060.1380.23260.14680.356-0.06930.0856-0.0308-0.04250.10530.02050.1207151.6705-53.3084230.8335
1111.44191.7-0.69098.008-2.73091.3414-0.1816-0.2212-0.1222-0.79980.138-0.00780.3666-0.17330.04360.09550.0238-0.03420.15370.00720.0987153.2218-39.2395227.3674
1120.7806-1.92411.26931.62690.92183.46120.17030.26490.2721-0.3056-0.0722-0.01810.0846-0.1403-0.09810.0905-0.0274-0.00790.09350.0560.0986150.9019-41.1128218.1576
113-0.2337-0.312-0.22610.36710.93561.89020.2823-0.22970.3457-0.09760.2235-0.1987-0.21230.7678-0.50580.3048-0.1182-0.20070.18520.1060.2263198.485-46.3706186.7152
1142.07330.3141-0.16331.65470.3266-0.8465-0.10640.14770.07770.02-0.06710.2882-0.01290.11550.17360.1781-0.0633-0.0420.10370.01090.0704153.2318-31.2756224.0114
1157.3718-0.016-3.18490.6647-0.58071.79420.3360.2749-0.3398-0.1198-0.25360.0312-0.5258-0.4024-0.08240.1174-0.0251-0.03040.08050.0050.0826164.0786-32.8876236.2761
11640.2302-1.8543-1.58459.8232-11.825816.0047-0.1941-1.37941.6736-0.2561.14060.2886-0.1448-2.0479-0.94640.132-0.0344-0.01330.0888-0.020.0949179.5838-42.4857234.3096
11719.0282-11.46821.70469.7778-1.67691.18420.8141-2.29610.5884-1.3460.39290.5124-0.0471-0.4563-1.2070.319-0.24370.04270.2899-0.03130.2428162.4377-18.9652233.0075
1181.54980.6945-0.86950.3564-0.140.3751-0.10750.1146-0.26080.0566-0.0209-0.0656-0.08530.00120.12830.1154-0.0218-0.07330.11150.02260.1234178.8085-35.8314237.2739
1194.03951.4922-1.71344.35961.72696.2899-0.11870.4212-0.1806-0.14970.2617-0.13630.1831-0.2031-0.1430.08-0.0482-0.0170.0775-0.01070.0879186.7182-25.072221.6414
1204.159-1.376-3.26260.41520.49282.4835-0.27370.12750.0259-0.09590.2189-0.13380.08850.1610.05480.1107-0.0299-0.04580.10810.03330.1256187.6609-28.1772231.954
精密化 TLSグループ
IDRefine-IDRefine TLS-IDAuth asym-IDLabel asym-IDAuth seq-IDLabel seq-ID
1X-RAY DIFFRACTION1AA3 - 2917 - 43
2X-RAY DIFFRACTION2AA30 - 5844 - 72
3X-RAY DIFFRACTION3AA59 - 8073 - 94
4X-RAY DIFFRACTION4AA81 - 10995 - 123
5X-RAY DIFFRACTION5AA110 - 124124 - 138
6X-RAY DIFFRACTION6AA125 - 139139 - 153
7X-RAY DIFFRACTION7AA140 - 170154 - 184
8X-RAY DIFFRACTION8AA171 - 182185 - 196
9X-RAY DIFFRACTION9AA183 - 193197 - 207
10X-RAY DIFFRACTION10AA194 - 212208 - 226
11X-RAY DIFFRACTION11AA213 - 230227 - 244
12X-RAY DIFFRACTION12AA231 - 246245 - 260
13X-RAY DIFFRACTION13AA247 - 252261 - 266
14X-RAY DIFFRACTION14AA253 - 265267 - 279
15X-RAY DIFFRACTION15AA266 - 292280 - 306
16X-RAY DIFFRACTION16AA293 - 312307 - 326
17X-RAY DIFFRACTION17AA313 - 327327 - 341
18X-RAY DIFFRACTION18AA328 - 367342 - 381
19X-RAY DIFFRACTION19AA368 - 402382 - 416
20X-RAY DIFFRACTION20AA403 - 409417 - 423
21X-RAY DIFFRACTION21BB4 - 4218 - 56
22X-RAY DIFFRACTION22BB43 - 5857 - 72
23X-RAY DIFFRACTION23BB59 - 7973 - 93
24X-RAY DIFFRACTION24BB80 - 9294 - 106
25X-RAY DIFFRACTION25BB93 - 111107 - 125
26X-RAY DIFFRACTION26BB112 - 154126 - 168
27X-RAY DIFFRACTION27BB155 - 182169 - 196
28X-RAY DIFFRACTION28BB183 - 205197 - 219
29X-RAY DIFFRACTION29BB206 - 219220 - 233
30X-RAY DIFFRACTION30BB220 - 228234 - 242
31X-RAY DIFFRACTION31BB229 - 237243 - 251
32X-RAY DIFFRACTION32BB238 - 264252 - 278
33X-RAY DIFFRACTION33BB265 - 291279 - 305
34X-RAY DIFFRACTION34BB292 - 300306 - 314
35X-RAY DIFFRACTION35BB301 - 322315 - 336
36X-RAY DIFFRACTION36BB323 - 331337 - 345
37X-RAY DIFFRACTION37BB332 - 346346 - 360
38X-RAY DIFFRACTION38BB347 - 356361 - 370
39X-RAY DIFFRACTION39BB357 - 385371 - 399
40X-RAY DIFFRACTION40BB386 - 411400 - 425
41X-RAY DIFFRACTION41CC3 - 2317 - 37
42X-RAY DIFFRACTION42CC24 - 4138 - 55
43X-RAY DIFFRACTION43CC42 - 5456 - 68
44X-RAY DIFFRACTION44CC55 - 8169 - 95
45X-RAY DIFFRACTION45CC82 - 9196 - 105
46X-RAY DIFFRACTION46CC92 - 116106 - 130
47X-RAY DIFFRACTION47CC117 - 134131 - 148
48X-RAY DIFFRACTION48CC135 - 192149 - 206
49X-RAY DIFFRACTION49CC193 - 213207 - 227
50X-RAY DIFFRACTION50CC214 - 241228 - 255
51X-RAY DIFFRACTION51CC242 - 250256 - 264
52X-RAY DIFFRACTION52CC251 - 262265 - 276
53X-RAY DIFFRACTION53CC263 - 292277 - 306
54X-RAY DIFFRACTION54CC293 - 312307 - 326
55X-RAY DIFFRACTION55CC313 - 327327 - 341
56X-RAY DIFFRACTION56CC328 - 343342 - 357
57X-RAY DIFFRACTION57CC344 - 370358 - 384
58X-RAY DIFFRACTION58CC371 - 384385 - 398
59X-RAY DIFFRACTION59CC385 - 398399 - 412
60X-RAY DIFFRACTION60CC399 - 412413 - 426
61X-RAY DIFFRACTION61DD1 - 1515 - 29
62X-RAY DIFFRACTION62DD16 - 3630 - 50
63X-RAY DIFFRACTION63DD37 - 5351 - 67
64X-RAY DIFFRACTION64DD54 - 7968 - 93
65X-RAY DIFFRACTION65DD80 - 9294 - 106
66X-RAY DIFFRACTION66DD93 - 118107 - 132
67X-RAY DIFFRACTION67DD119 - 126133 - 140
68X-RAY DIFFRACTION68DD127 - 146141 - 160
69X-RAY DIFFRACTION69DD147 - 168161 - 182
70X-RAY DIFFRACTION70DD169 - 185183 - 199
71X-RAY DIFFRACTION71DD186 - 195200 - 209
72X-RAY DIFFRACTION72DD196 - 201210 - 215
73X-RAY DIFFRACTION73DD202 - 222216 - 236
74X-RAY DIFFRACTION74DD223 - 253237 - 267
75X-RAY DIFFRACTION75DD254 - 265268 - 279
76X-RAY DIFFRACTION76DD266 - 290280 - 304
77X-RAY DIFFRACTION77DD291 - 303305 - 317
78X-RAY DIFFRACTION78DD304 - 322318 - 336
79X-RAY DIFFRACTION79DD323 - 381337 - 395
80X-RAY DIFFRACTION80DD382 - 412396 - 426
81X-RAY DIFFRACTION81EE3 - 3017 - 44
82X-RAY DIFFRACTION82EE31 - 4245 - 56
83X-RAY DIFFRACTION83EE43 - 7857 - 92
84X-RAY DIFFRACTION84EE79 - 9293 - 106
85X-RAY DIFFRACTION85EE93 - 109107 - 123
86X-RAY DIFFRACTION86EE110 - 120124 - 134
87X-RAY DIFFRACTION87EE121 - 126135 - 140
88X-RAY DIFFRACTION88EE127 - 154141 - 168
89X-RAY DIFFRACTION89EE155 - 167169 - 181
90X-RAY DIFFRACTION90EE168 - 183182 - 197
91X-RAY DIFFRACTION91EE184 - 210198 - 224
92X-RAY DIFFRACTION92EE211 - 230225 - 244
93X-RAY DIFFRACTION93EE231 - 240245 - 254
94X-RAY DIFFRACTION94EE241 - 272255 - 286
95X-RAY DIFFRACTION95EE273 - 291287 - 305
96X-RAY DIFFRACTION96EE292 - 301306 - 315
97X-RAY DIFFRACTION97EE302 - 322316 - 336
98X-RAY DIFFRACTION98EE323 - 366337 - 380
99X-RAY DIFFRACTION99EE367 - 383381 - 397
100X-RAY DIFFRACTION100EE384 - 411398 - 425
101X-RAY DIFFRACTION101FF2 - 2116 - 35
102X-RAY DIFFRACTION102FF22 - 3036 - 44
103X-RAY DIFFRACTION103FF31 - 4445 - 58
104X-RAY DIFFRACTION104FF45 - 7859 - 92
105X-RAY DIFFRACTION105FF79 - 10493 - 118
106X-RAY DIFFRACTION106FF105 - 119119 - 133
107X-RAY DIFFRACTION107FF120 - 127134 - 141
108X-RAY DIFFRACTION108FF128 - 164142 - 178
109X-RAY DIFFRACTION109FF165 - 177179 - 191
110X-RAY DIFFRACTION110FF178 - 188192 - 202
111X-RAY DIFFRACTION111FF189 - 210203 - 224
112X-RAY DIFFRACTION112FF211 - 231225 - 245
113X-RAY DIFFRACTION113FF232 - 266246 - 280
114X-RAY DIFFRACTION114FF267 - 292281 - 306
115X-RAY DIFFRACTION115FF293 - 309307 - 323
116X-RAY DIFFRACTION116FF310 - 320324 - 334
117X-RAY DIFFRACTION117FF321 - 331335 - 345
118X-RAY DIFFRACTION118FF332 - 370346 - 384
119X-RAY DIFFRACTION119FF371 - 388385 - 402
120X-RAY DIFFRACTION120FF389 - 412403 - 426

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万見について

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お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

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2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月:コロナウイルスプロテーアーゼ

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2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか? / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例:em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る