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- PDB-2plv: STRUCTURAL FACTORS THAT CONTROL CONFORMATIONAL TRANSITIONS AND SE... -
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Basic information
Entry | Database: PDB / ID: 2plv | |||||||||
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Title | STRUCTURAL FACTORS THAT CONTROL CONFORMATIONAL TRANSITIONS AND SEROTYPE SPECIFICITY IN TYPE 3 POLIOVIRUS | |||||||||
![]() | (HUMAN POLIOVIRUS TYPE 1 (SUBUNIT ...) x 4 | |||||||||
![]() | VIRUS / PICORNAVIRUS / Icosahedral virus | |||||||||
Function / homology | ![]() symbiont-mediated suppression of host translation initiation / symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of RIG-I activity / symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of MDA-5 activity / picornain 2A / symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of MAVS activity / symbiont-mediated suppression of host mRNA export from nucleus / ribonucleoside triphosphate phosphatase activity / symbiont genome entry into host cell via pore formation in plasma membrane / picornain 3C / T=pseudo3 icosahedral viral capsid ...symbiont-mediated suppression of host translation initiation / symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of RIG-I activity / symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of MDA-5 activity / picornain 2A / symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of MAVS activity / symbiont-mediated suppression of host mRNA export from nucleus / ribonucleoside triphosphate phosphatase activity / symbiont genome entry into host cell via pore formation in plasma membrane / picornain 3C / T=pseudo3 icosahedral viral capsid / host cell cytoplasmic vesicle membrane / endocytosis involved in viral entry into host cell / nucleoside-triphosphate phosphatase / protein complex oligomerization / monoatomic ion channel activity / RNA helicase activity / induction by virus of host autophagy / RNA-directed RNA polymerase / viral RNA genome replication / cysteine-type endopeptidase activity / RNA-dependent RNA polymerase activity / virus-mediated perturbation of host defense response / DNA-templated transcription / host cell nucleus / virion attachment to host cell / structural molecule activity / proteolysis / RNA binding / ATP binding / membrane / metal ion binding Similarity search - Function | |||||||||
Biological species | ![]() | |||||||||
Method | ![]() | |||||||||
![]() | Filman, D.J. / Hogle, J.M. | |||||||||
![]() | ![]() Title: Structural factors that control conformational transitions and serotype specificity in type 3 poliovirus Authors: Filman, D.J. / Syed, R. / Chow, M. / Macadam, A.J. / Minor, P.D. / Hogle, J.M. #1: ![]() Year: 1989 Title: Structural Basis for Serotypic Differences and Thermostability in Poliovirus Authors: Hogle, J.M. / Filman, D.J. / Syed, R. / Chow, M. / Minor, P.D. #2: ![]() Title: Structural Determinants of Serotype Specificity and Host Range in Poliovirus Authors: Hogle, J.M. / Syed, R. / Yeates, T.O. / Jacobson, D. / Critchlow, T. / Filman, D.J. #3: ![]() Title: Three-Dimensional Structure of Poliovirus Serotype 1 Neutralizing Determinants Authors: Page, G.S. / Mosser, A.G. / Hogle, J.M. / Filman, D.J. / Rueckert, R.R. / Chow, M. #4: ![]() Title: Structural Domains of the Poliovirus Polyprotein are Major Determinants for Proteolytic Cleavage at Gln-Gly Pairs Authors: Ypma-Wong, M.F. / Filman, D.J. / Hogle, J.M. / Semler, B.L. #5: ![]() Title: Engineering a Poliovirus Type 2 Antigenic Site on a Type 1 Capsid Results in a Chimaeric Virus which is Neurovirulent for Mice Authors: Martin, A. / Wychowski, C. / Couderc, T. / Crainic, R. / Hogle, J. / Girard, M. #6: ![]() Title: The Structure of Poliovirus Authors: Hogle, J.M. / Chow, M. / Filman, D.J. #7: ![]() Title: Myristylation of Picornavirus Capsid Protein Vp4 and its Structural Significance Authors: Chow, M. / Newman, J.F.E. / Filman, D. / Hogle, J.M. / Rowlands, D.J. / Brown, F. #8: ![]() Title: The Structure of Poliovirus at 2.9 Angstroms Resolution. Crystallographic Methods and Biological Implications Authors: Hogle, J.M. / Chow, M. / Filman, D.J. #9: ![]() Title: Three-Dimensional Structure of Poliovirus at 2.9 Angstroms Resolution Authors: Hogle, J.M. / Chow, M. / Filman, D.J. | |||||||||
History |
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Remark 700 | SHEET STRANDS 2, 3, AND 4 ARE COMMON TO SHEETS *1B1* AND *1B2*. THE SECOND STRAND OF SHEET *1B3* IS ...SHEET STRANDS 2, 3, AND 4 ARE COMMON TO SHEETS *1B1* AND *1B2*. THE SECOND STRAND OF SHEET *1B3* IS THE SAME AS THE THIRD STRAND OF SHEETS *1B1* AND *1B2*. STRANDS 1, 2, AND 3 ARE COMMON TO SHEETS *2B1*, *2B2*, AND *2B3*. STRANDS 1 AND 2 ARE COMMON TO SHEETS *2C1*, *2C2*, AND *2C3*. THE LAST FOUR STRANDS ARE COMMON TO SHEETS *3B1* AND *3B2*. SEQUENCE NUMBERING IS UNCERTAIN IN THE THIRD STRAND OF SHEET * 4N*. THE FIFTH AND SIXTH STRANDS OF SHEET * 3C* ARE FROM A THREEFOLD-RELATED PROTOMER. BECAUSE OF LIMITATIONS IMPOSED BY THE PROTEIN DATA BANK FORMAT IT IS NOT POSSIBLE TO PRESENT THIS SHEET ON SHEET RECORDS. INSTEAD THIS SHEET IS SPECIFIED IN THIS REMARK. 3C 7 ILE 3 82 LEU 3 87 0 3C 7 GLY 3 188 VAL 3 199 -1 N GLY 3 188 O LEU 3 87 3C 7 ALA 3 126 ALA 3 135 -1 N ALA 3 135 O TYR 3 189 3C 7 THR 3 152 ILE 3 158 -1 N THR 3 152 O TYR 3 134 3C 7 ASN 2 20 THR 2 25 1 O ASN 2 20 N HIS 3 153 3C 7 LEU 2 14 LEU 2 18 -1 N LEU 2 18 O SER 2 21 3C 7 THR 1 36 SER 1 38 -1 N THR 1 36 O THR 2 17 SHEET * TT* CONSISTS OF FIVE STRANDS. ALL FIVE STRANDS OF SHEET * TT* ARE FROM FIVEFOLD-RELATED PROTOMERS. BECAUSE OF LIMITATIONS IMPOSED BY THE PROTEIN DATA BANK FORMAT IT IS NOT POSSIBLE TO PRESENT THIS SHEET ON SHEET RECORDS. INSTEAD THIS SHEET IS SPECIFIED IN THIS REMARK. TT 5 LEU 3 2 THR 3 7 0 TT 5 LEU 3 2 THR 3 7 1 N LEU 3 2 O PRO 3 3 TT 5 LEU 3 2 THR 3 7 1 N LEU 3 2 O PRO 3 3 TT 5 LEU 3 2 THR 3 7 1 N LEU 3 2 O PRO 3 3 TT 5 LEU 3 2 THR 3 7 1 N LEU 3 2 O PRO 3 3 SHEET * 4M* CONSISTS OF THREE STRANDS. STRAND 3 OF SHEET * 4M* IS FROM A FIVEFOLD-RELATED PROTOMER. BECAUSE OF LIMITATIONS IMPOSED BY THE PROTEIN DATA BANK FORMAT IT IS NOT POSSIBLE TO PRESENT THIS SHEET ON SHEET RECORDS. INSTEAD THIS SHEET IS SPECIFIED IN THIS REMARK. 4M 3 ALA 1 21 SER 1 23 0 4M 3 GLN 4 44 SER 4 47 -1 N SER 4 47 O ALA 1 21 4M 3 ASN 4 15 ASN 4 17 -1 N ASN 4 17 O GLN 4 44 |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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-Validation report
Summary document | ![]() | 448.9 KB | Display | ![]() |
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Full document | ![]() | 497.7 KB | Display | |
Data in XML | ![]() | 25.2 KB | Display | |
Data in CIF | ![]() | 39.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Assembly
Deposited unit | ![]()
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Unit cell |
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Atom site foot note | 1: RESIDUE PRO 2 83 IS A CIS PROLINE. / 2: POSSIBLE ANION SITE. / 3: POSSIBLE CATION SITE. / 4: SEE REMARK 6. | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Symmetry | Point symmetry: (Hermann–Mauguin notation: 532 / Schoenflies symbol: I (icosahedral)) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Noncrystallographic symmetry (NCS) | NCS oper:
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