Resolution: 1.8→50 Å / Num. obs: 56481 / % possible obs: 98.2 % / Observed criterion σ(I): -3 / Redundancy: 3.6 % / Rsym value: 0.046 / Net I/σ(I): 28.8
Reflection shell
Resolution: 1.8→1.86 Å / Redundancy: 2.5 % / Mean I/σ(I) obs: 2 / Rsym value: 0.504 / % possible all: 88.5
-
Processing
Software
Name
Version
Classification
REFMAC
5.2.0019
refinement
HKL-2000
datareduction
HKL-2000
datascaling
SOLVE
phasing
Refinement
Method to determine structure: MAD / Resolution: 1.8→50 Å / Cor.coef. Fo:Fc: 0.972 / Cor.coef. Fo:Fc free: 0.959 / SU B: 4.821 / SU ML: 0.081 / Cross valid method: THROUGHOUT / σ(F): 0 / ESU R: 0.108 / ESU R Free: 0.107 / Stereochemistry target values: MAXIMUM LIKELIHOOD Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS, ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.204
2858
5.1 %
RANDOM
Rwork
0.169
-
-
-
obs
0.171
53533
98 %
-
all
-
53533
-
-
Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: BABINET MODEL WITH MASK
Displacement parameters
Biso mean: 34.88 Å2
Baniso -1
Baniso -2
Baniso -3
1-
2.29 Å2
0 Å2
-1.44 Å2
2-
-
-1.49 Å2
0 Å2
3-
-
-
-1.63 Å2
Refinement step
Cycle: LAST / Resolution: 1.8→50 Å
Protein
Nucleic acid
Ligand
Solvent
Total
Num. atoms
3828
0
153
331
4312
Refine LS restraints
Refine-ID
Type
Dev ideal
Dev ideal target
Number
X-RAY DIFFRACTION
r_bond_refined_d
0.012
0.022
4062
X-RAY DIFFRACTION
r_bond_other_d
X-RAY DIFFRACTION
r_angle_refined_deg
1.518
2.002
5503
X-RAY DIFFRACTION
r_angle_other_deg
X-RAY DIFFRACTION
r_dihedral_angle_1_deg
5.436
5
473
X-RAY DIFFRACTION
r_dihedral_angle_2_deg
34.2
24.456
193
X-RAY DIFFRACTION
r_dihedral_angle_3_deg
13.546
15
715
X-RAY DIFFRACTION
r_dihedral_angle_4_deg
15.545
15
22
X-RAY DIFFRACTION
r_chiral_restr
0.102
0.2
600
X-RAY DIFFRACTION
r_gen_planes_refined
0.005
0.02
3008
X-RAY DIFFRACTION
r_gen_planes_other
X-RAY DIFFRACTION
r_nbd_refined
0.208
0.2
1614
X-RAY DIFFRACTION
r_nbd_other
X-RAY DIFFRACTION
r_nbtor_refined
0.305
0.2
2792
X-RAY DIFFRACTION
r_nbtor_other
X-RAY DIFFRACTION
r_xyhbond_nbd_refined
0.143
0.2
304
X-RAY DIFFRACTION
r_xyhbond_nbd_other
X-RAY DIFFRACTION
r_metal_ion_refined
X-RAY DIFFRACTION
r_metal_ion_other
X-RAY DIFFRACTION
r_symmetry_vdw_refined
0.163
0.2
38
X-RAY DIFFRACTION
r_symmetry_vdw_other
X-RAY DIFFRACTION
r_symmetry_hbond_refined
0.12
0.2
14
X-RAY DIFFRACTION
r_symmetry_hbond_other
X-RAY DIFFRACTION
r_symmetry_metal_ion_refined
X-RAY DIFFRACTION
r_symmetry_metal_ion_other
X-RAY DIFFRACTION
r_mcbond_it
1.84
3
2444
X-RAY DIFFRACTION
r_mcbond_other
X-RAY DIFFRACTION
r_mcangle_it
2.627
4
3819
X-RAY DIFFRACTION
r_scbond_it
3.436
5
1838
X-RAY DIFFRACTION
r_scangle_it
5.007
7
1684
X-RAY DIFFRACTION
r_rigid_bond_restr
X-RAY DIFFRACTION
r_sphericity_free
X-RAY DIFFRACTION
r_sphericity_bonded
LS refinement shell
Resolution: 1.8→1.85 Å / Total num. of bins used: 20