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- PDB-2oan: Structure of oxidized beta-actin -

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Basic information

Entry
Database: PDB / ID: 2oan
TitleStructure of oxidized beta-actin
ComponentsActin, cytoplasmic 1
KeywordsSTRUCTURAL PROTEIN / Disulfide / Cysteine covalently modified by oxidation
Function / homology
Function and homology information


Adherens junctions interactions / Cell-extracellular matrix interactions / RHOBTB2 GTPase cycle / Gap junction degradation / Formation of annular gap junctions / MAP2K and MAPK activation / EPHB-mediated forward signaling / Regulation of actin dynamics for phagocytic cup formation / RHO GTPases Activate WASPs and WAVEs / RHO GTPases activate IQGAPs ...Adherens junctions interactions / Cell-extracellular matrix interactions / RHOBTB2 GTPase cycle / Gap junction degradation / Formation of annular gap junctions / MAP2K and MAPK activation / EPHB-mediated forward signaling / Regulation of actin dynamics for phagocytic cup formation / RHO GTPases Activate WASPs and WAVEs / RHO GTPases activate IQGAPs / RHO GTPases Activate Formins / structural constituent of postsynaptic actin cytoskeleton / VEGFA-VEGFR2 Pathway / dense body / Clathrin-mediated endocytosis / NuA4 histone acetyltransferase complex / axonogenesis / actin filament / cell motility / Hydrolases; Acting on acid anhydrides; Acting on acid anhydrides to facilitate cellular and subcellular movement / actin cytoskeleton / cytoskeleton / hydrolase activity / axon / focal adhesion / synapse / protein kinase binding / protein-containing complex / ATP binding / membrane / nucleus / plasma membrane / cytosol / cytoplasm
Similarity search - Function
ATPase, substrate binding domain, subdomain 4 / Actin; Chain A, domain 4 / ATPase, nucleotide binding domain / Actins signature 1. / Actin, conserved site / Actins signature 2. / Actin/actin-like conserved site / Actins and actin-related proteins signature. / Actin / Actin family ...ATPase, substrate binding domain, subdomain 4 / Actin; Chain A, domain 4 / ATPase, nucleotide binding domain / Actins signature 1. / Actin, conserved site / Actins signature 2. / Actin/actin-like conserved site / Actins and actin-related proteins signature. / Actin / Actin family / Actin / ATPase, nucleotide binding domain / Nucleotidyltransferase; domain 5 / Alpha-Beta Complex / 2-Layer Sandwich / Alpha Beta
Similarity search - Domain/homology
ADENOSINE-5'-TRIPHOSPHATE / Actin, cytoplasmic 1
Similarity search - Component
Biological speciesBos taurus (cattle)
MethodX-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.606 Å
AuthorsSchmitzberger, F. / Lassing, I. / Nordlund, P. / Lindberg, U.
CitationJournal: J.Mol.Biol. / Year: 2007
Title: Molecular and Structural Basis for Redox Regulation of beta-Actin.
Authors: Lassing, I. / Schmitzberger, F. / Bjornstedt, M. / Holmgren, A. / Nordlund, P. / Schutt, C.E. / Lindberg, U.
History
DepositionDec 16, 2006Deposition site: RCSB / Processing site: RCSB
Revision 1.0May 1, 2007Provider: repository / Type: Initial release
Revision 1.1Oct 27, 2007Group: Version format compliance
Revision 1.2Jul 13, 2011Group: Version format compliance
Revision 1.3Nov 12, 2014Group: Non-polymer description
Revision 1.4Oct 18, 2017Group: Refinement description / Category: software / Item: _software.name
Revision 1.5Aug 30, 2023Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Refinement description
Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / pdbx_struct_conn_angle / struct_conn / struct_conn_type / struct_ncs_dom_lim / struct_ref_seq_dif / struct_site
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_conn_angle.ptnr1_auth_asym_id / _pdbx_struct_conn_angle.ptnr1_auth_comp_id / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_asym_id / _pdbx_struct_conn_angle.ptnr1_label_atom_id / _pdbx_struct_conn_angle.ptnr1_label_comp_id / _pdbx_struct_conn_angle.ptnr2_auth_asym_id / _pdbx_struct_conn_angle.ptnr2_label_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_comp_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_label_asym_id / _pdbx_struct_conn_angle.ptnr3_label_atom_id / _pdbx_struct_conn_angle.ptnr3_label_comp_id / _pdbx_struct_conn_angle.value / _struct_conn.conn_type_id / _struct_conn.id / _struct_conn.pdbx_dist_value / _struct_conn.pdbx_leaving_atom_flag / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn.ptnr2_label_seq_id / _struct_conn_type.id / _struct_ncs_dom_lim.beg_auth_comp_id / _struct_ncs_dom_lim.beg_label_asym_id / _struct_ncs_dom_lim.beg_label_seq_id / _struct_ncs_dom_lim.end_auth_comp_id / _struct_ncs_dom_lim.end_label_asym_id / _struct_ncs_dom_lim.end_label_seq_id / _struct_ref_seq_dif.details / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: Actin, cytoplasmic 1
B: Actin, cytoplasmic 1
C: Actin, cytoplasmic 1
D: Actin, cytoplasmic 1
hetero molecules


Theoretical massNumber of molelcules
Total (without water)169,92817
Polymers167,2594
Non-polymers2,66913
Water9,044502
1
B: Actin, cytoplasmic 1
D: Actin, cytoplasmic 1
hetero molecules


Theoretical massNumber of molelcules
Total (without water)85,0129
Polymers83,6292
Non-polymers1,3837
Water362
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
2
C: Actin, cytoplasmic 1
hetero molecules

C: Actin, cytoplasmic 1
hetero molecules


Theoretical massNumber of molelcules
Total (without water)84,9168
Polymers83,6292
Non-polymers1,2876
Water362
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
crystal symmetry operation4_555x,-y,-z1
3
A: Actin, cytoplasmic 1
hetero molecules

A: Actin, cytoplasmic 1
hetero molecules


Theoretical massNumber of molelcules
Total (without water)84,9168
Polymers83,6292
Non-polymers1,2876
Water362
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
crystal symmetry operation4_555x,-y,-z1
Unit cell
Length a, b, c (Å)119.174, 222.589, 133.719
Angle α, β, γ (deg.)90.00, 90.00, 90.00
Int Tables number20
Space group name H-MC2221
Components on special symmetry positions
IDModelComponents
11A-829-

HOH

21C-702-

HOH

31C-737-

HOH

41C-752-

HOH

51C-756-

HOH

Noncrystallographic symmetry (NCS)NCS domain:
IDEns-IDDetails
11A
21B
31C
41D
51A
61B
71C
81D
91A
101B
111C
121D
131A
141B
151C
161D
171A
181B
191C
201D
211A
221B
231C
241D
251A
261B
271C
281D
291A
301B
311C
321D
331A
341B
351C
361D
371A
381B
391C
401D
411A
421B
431C
441D
451A
461B
471C
481D
491A
501B
511C
521D
531A
541B
551C
561D
571A
581B
591C
601D
611A
621B
631C
641D
651A
661B
671C
681D
691A
701B
711C
721D
731A
741B
751C
761D
771A
781B
791C
801D
811A
821B
831C
841D
851A
861B
871C
881D
891A
901B
911C
921D
931A
941B
951C
961D
971A
981B
991C
1001D
1011A
1021B
1031C
1041D
1051A
1061B
1071C
1081D
1091A
1101B
1111C
1121D
1131A
1141B
1151C
1161D
1171A
1181B
1191C
1201D
1211A
1221B
1231C
1241D
1251A
1261B
1271C
1281D
1291A
1301B
1311C
1321D
1331A
1341B
1351C
1361D
1371A
1381B
1391C
1401D
1411A
1421B
1431C
1441D
1451A
1461B
1471C
1481D
1491A
1501B
1511C
1521D
1531A
1541B
1551C
1561D
1571A
1581B
1591C
1601D
12B
22C
32D
13A
23B
14A
24D
15B
25C
16A
26B
36C
17A
27B
18A
28B
38B
48B
19A
29D
110A
210D
111B
211C
112A
212B
113C
213D
114B
214C
314D
115B
215C
315D
116A
216C
117B
217D
118B
218C
318D
119B
219C
120A
220D
121A
221B
321C
421D
122A
222B
322C
422D
123A
223B
323C
423D
523A
623B
723C
823D
124A
224B
324C
424D
125A
225B
325C
425D
525A
625B
725C
825D
126A
226B
326C
426D
526A
626B
726C
826D
926A
1026B
1126C
1226D
127A
227B
327C
427D
128A
228B
328C
428D
528A
628B
728C
828D
928A
1028B
1128C
1228D
129A
229C
329D
130A
230B
330C
430D
530A
630B
730C
830D
930A
1030B
1130C
1230D
1330A
1430B
1530C
1630D
1730A
1830B
1930C
2030D
2130A
2230B
2330C
2430D
2530A
2630B
2730C
2830D
131B
231C
331D
132A
232D
133A
233B
333D
134A
234B
334C
135A
235B
335C
435D
535A
635B
735C
835D
935A
1035B
1135C
1235D
1335A
1435B
1535C
1635D
1735A
1835B
1935C
2035D
2135A
2235B
2335C
2435D
2535A
2635B
2735C
2835D
136A
236B
336C
436D
536A
636B
736C
836D
936A
1036B
1136C
1236D
1336A
1436B
1536C
1636D
1736A
1836B
1936C
2036D
2136A
2236B
2336C
2436D
2536A
2636B
2736C
2836D
137A
237B
337C
138A
238B
338C
438D
538A
638B
738C
838D
938A
1038B
1138C
1238D
1338A
1438B
1538C
1638D
1738A
1838B
1938C
2038D
2138A
2238B
2338C
2438D
2538A
2638B
2738C
2838D
2938A
3038B
3138C
3238D
139A
239B
339D
140C
240D
141A
241B
142A
242B
342C
442D
542A
642B
742C
842D
942A
1042B
1142C
1242D
1342A
1442B
1542C
1642D
1742A
1842B
1942C
2042D
2142A
2242B
2342C
2442D
2542A
2642B
2742C
2842D
2942A
3042B
3142C
3242D
143C
243D
144A
244B
344C
444A
544B
644C
744A
844B
944C
145A
245B
345D
146B
246C
346D
147A
247D
148B
248C
149A
249D
150B
250C
151B
251C
351D
152B
252C
352D
153A
253D
154B
254C
155A
255C
355D
156A
256C
356D
157C
257D
158B
258C
358D
159B
259C
160A
260D
161B
261C
361D
162A
262C
362D
163A
263B
363C
463D
164A
264B
364D
165A
265C
365D
166A
266D
167B
267C
168A
268B
368D
169A
269C
369D
170A
270C
370D

NCS domain segments:
Dom-IDComponent-IDEns-IDBeg auth comp-IDBeg label comp-IDEnd auth comp-IDEnd label comp-IDRefine codeAuth asym-IDLabel asym-IDAuth seq-IDLabel seq-ID
111ALAALAVALVAL2AA7 - 97 - 9
211ALAALAVALVAL2BB7 - 97 - 9
311ALAALAVALVAL2CC7 - 97 - 9
411ALAALAVALVAL2DD7 - 97 - 9
521SERSERALAALA2AA52 - 5852 - 58
621SERSERALAALA2BB52 - 5852 - 58
721SERSERALAALA2CC52 - 5852 - 58
821SERSERALAALA2DD52 - 5852 - 58
931GLYGLYLEULEU4AA63 - 6563 - 65
1031GLYGLYLEULEU4BB63 - 6563 - 65
1131GLYGLYLEULEU4CC63 - 6563 - 65
1231GLYGLYLEULEU4DD63 - 6563 - 65
1341THRTHRGLYGLY2AA149 - 156149 - 156
1441THRTHRGLYGLY2BB149 - 156149 - 156
1541THRTHRGLYGLY2CC149 - 156149 - 156
1641THRTHRGLYGLY2DD149 - 156149 - 156
1751LEULEUGLYGLY2AA180 - 182180 - 182
1851LEULEUGLYGLY2BB180 - 182180 - 182
1951LEULEUGLYGLY2CC180 - 182180 - 182
2051LEULEUGLYGLY2DD180 - 182180 - 182
2161SERSERSERSER2AA271271
2261SERSERSERSER2BB271271
2361SERSERSERSER2CC271271
2461SERSERSERSER2DD271271
2571TYRTYRVALVAL2AA337 - 339337 - 339
2671TYRTYRVALVAL2BB337 - 339337 - 339
2771TYRTYRVALVAL2CC337 - 339337 - 339
2871TYRTYRVALVAL2DD337 - 339337 - 339
2981ALAALASERSER6AA347 - 350347 - 350
3081ALAALASERSER6BB347 - 350347 - 350
3181ALAALASERSER6CC347 - 350347 - 350
3281ALAALASERSER6DD347 - 350347 - 350
3391ILEILELYSLYS6AA357 - 359357 - 359
3491ILEILELYSLYS6BB357 - 359357 - 359
3591ILEILELYSLYS6CC357 - 359357 - 359
3691ILEILELYSLYS6DD357 - 359357 - 359
37101GLUGLUTHRTHR6AA226 - 229226 - 229
38101GLUGLUTHRTHR6BB226 - 229226 - 229
39101GLUGLUTHRTHR6CC226 - 229226 - 229
40101GLUGLUTHRTHR6DD226 - 229226 - 229
41111LEULEULEULEU2AA236236
42111LEULEULEULEU2BB236236
43111LEULEULEULEU2CC236236
44111LEULEULEULEU2DD236236
45121SERSERLYSLYS4AA60 - 6160 - 61
46121SERSERLYSLYS4BB60 - 6160 - 61
47121SERSERLYSLYS4CC60 - 6160 - 61
48121SERSERLYSLYS4DD60 - 6160 - 61
49131ALAALAASPASP2AA174 - 179174 - 179
50131ALAALAASPASP2BB174 - 179174 - 179
51131ALAALAASPASP2CC174 - 179174 - 179
52131ALAALAASPASP2DD174 - 179174 - 179
53141ILEILELYSLYS2AA289 - 291289 - 291
54141ILEILELYSLYS2BB289 - 291289 - 291
55141ILEILELYSLYS2CC289 - 291289 - 291
56141ILEILELYSLYS2DD289 - 291289 - 291
57151LYSLYSCYSCYS6AA284 - 285284 - 285
58151LYSLYSCYSCYS6BB284 - 285284 - 285
59151LYSLYSCYSCYS6CC284 - 285284 - 285
60151LYSLYSCYSCYS6DD284 - 285284 - 285
61161PROPROPROPRO2AA102 - 112102 - 112
62161PROPROPROPRO2BB102 - 112102 - 112
63161PROPROPROPRO2CC102 - 112102 - 112
64161PROPROPROPRO2DD102 - 112102 - 112
65171PROPROPROPRO6AA9898
66171PROPROPROPRO6BB9898
67171PROPROPROPRO6CC9898
68171PROPROPROPRO6DD9898
69181VALVALALAALA2AA96 - 9796 - 97
70181VALVALALAALA2BB96 - 9796 - 97
71181VALVALALAALA2CC96 - 9796 - 97
72181VALVALALAALA2DD96 - 9796 - 97
73191ALAALAALAALA5AA321321
74191ALAALAALAALA5BB321321
75191ALAALAALAALA5CC321321
76191ALAALAALAALA5DD321321
77201ILEILEPROPRO2AA327 - 333327 - 333
78201ILEILEPROPRO2BB327 - 333327 - 333
79201ILEILEPROPRO2CC327 - 333327 - 333
80201ILEILEPROPRO2DD327 - 333327 - 333
81211TYRTYRTYRTYR2AA198198
82211TYRTYRTYRTYR2BB198198
83211TYRTYRTYRTYR2CC198198
84211TYRTYRTYRTYR2DD198198
85221GLUGLUARGARG2AA205 - 206205 - 206
86221GLUGLUARGARG2BB205 - 206205 - 206
87221GLUGLUARGARG2CC205 - 206205 - 206
88221GLUGLUARGARG2DD205 - 206205 - 206
89231GLUGLUGLYGLY4AA167 - 168167 - 168
90231GLUGLUGLYGLY4BB167 - 168167 - 168
91231GLUGLUGLYGLY4CC167 - 168167 - 168
92231GLUGLUGLYGLY4DD167 - 168167 - 168
93241GLYGLYHISHIS2AA273 - 275273 - 275
94241GLYGLYHISHIS2BB273 - 275273 - 275
95241GLYGLYHISHIS2CC273 - 275273 - 275
96241GLYGLYHISHIS2DD273 - 275273 - 275
97251VALVALPROPRO1AA10 - 2710 - 27
98251VALVALPROPRO1BB10 - 2710 - 27
99251VALVALPROPRO1CC10 - 2710 - 27
100251VALVALPROPRO1DD10 - 2710 - 27
101261PHEPHEPHEPHE3AA124124
102261PHEPHEPHEPHE3BB124124
103261PHEPHEPHEPHE3CC124124
104261PHEPHEPHEPHE3DD124124
105271TYRTYRMETMET1AA306 - 313306 - 313
106271TYRTYRMETMET1BB306 - 313306 - 313
107271TYRTYRMETMET1CC306 - 313306 - 313
108271TYRTYRMETMET1DD306 - 313306 - 313
109281GLNGLNLEULEU2AA314 - 320314 - 320
110281GLNGLNLEULEU2BB314 - 320314 - 320
111281GLNGLNLEULEU2CC314 - 320314 - 320
112281GLNGLNLEULEU2DD314 - 320314 - 320
113291TRPTRPSERSER2AA340 - 344340 - 344
114291TRPTRPSERSER2BB340 - 344340 - 344
115291TRPTRPSERSER2CC340 - 344340 - 344
116291TRPTRPSERSER2DD340 - 344340 - 344
117301VALVALLEULEU2AA134 - 142134 - 142
118301VALVALLEULEU2BB134 - 142134 - 142
119301VALVALLEULEU2CC134 - 142134 - 142
120301VALVALLEULEU2DD134 - 142134 - 142
121311TRPTRPPHEPHE1AA86 - 9086 - 90
122311TRPTRPPHEPHE1BB86 - 9086 - 90
123311TRPTRPPHEPHE1CC86 - 9086 - 90
124311TRPTRPPHEPHE1DD86 - 9086 - 90
125321GLUGLUMETMET2AA125 - 132125 - 132
126321GLUGLUMETMET2BB125 - 132125 - 132
127321GLUGLUMETMET2CC125 - 132125 - 132
128321GLUGLUMETMET2DD125 - 132125 - 132
129331TRPTRPTRPTRP1AA7979
130331TRPTRPTRPTRP1BB7979
131331TRPTRPTRPTRP1CC7979
132331TRPTRPTRPTRP1DD7979
133341ASPASPMETMET2AA81 - 8281 - 82
134341ASPASPMETMET2BB81 - 8281 - 82
135341ASPASPMETMET2CC81 - 8281 - 82
136341ASPASPMETMET2DD81 - 8281 - 82
137351THRTHRILEILE2AA278 - 282278 - 282
138351THRTHRILEILE2BB278 - 282278 - 282
139351THRTHRILEILE2CC278 - 282278 - 282
140351THRTHRILEILE2DD278 - 282278 - 282
141361LYSLYSLYSLYS2AA8484
142361LYSLYSLYSLYS2BB8484
143361LYSLYSLYSLYS2CC8484
144361LYSLYSLYSLYS2DD8484
145371LYSLYSTHRTHR2AA118 - 120118 - 120
146371LYSLYSTHRTHR2BB118 - 120118 - 120
147371LYSLYSTHRTHR2CC118 - 120118 - 120
148371LYSLYSTHRTHR2DD118 - 120118 - 120
149381ALAALALEULEU4AA170 - 171170 - 171
150381ALAALALEULEU4BB170 - 171170 - 171
151381ALAALALEULEU4CC170 - 171170 - 171
152381ALAALALEULEU4DD170 - 171170 - 171
153391ILEILEMETMET2AA122 - 123122 - 123
154391ILEILEMETMET2BB122 - 123122 - 123
155391ILEILEMETMET2CC122 - 123122 - 123
156391ILEILEMETMET2DD122 - 123122 - 123
157401LEULEULEULEU2AA346346
158401LEULEULEULEU2BB346346
159401LEULEULEULEU2CC346346
160401LEULEULEULEU2DD346346
112ARGARGARGARG3BB9595
212ARGARGARGARG3CC9595
312ARGARGARGARG3DD9595
113PROPROPROPRO2AA172172
213PROPROPROPRO2BB172172
114ALAALAALAALA4AA66
214ALAALAALAALA4DD66
115ALAALAALAALA4BB66
215ALAALAALAALA4CC66
116ARGARGARGARG6AA3939
216ARGARGARGARG6BB3939
316ARGARGARGARG6CC3939
117HISHISHISHIS2AA173173
217HISHISHISHIS2BB173173
118ATPATPATPATP6AG501
218ATPATPATPATP6BJ501
318ATPATPATPATP6BJ501
418ATPATPATPATP6BJ501
119TRPTRPTRPTRP6AA356356
219TRPTRPTRPTRP6DD356356
1110GLUGLUGLUGLU3AA276276
2110GLUGLUGLUGLU3DD276276
1111GLUGLUGLUGLU2BB276276
2111GLUGLUGLUGLU2CC276276
1112TYRTYRTYRTYR5AA169169
2112TYRTYRTYRTYR5BB169169
1113TYRTYRTYRTYR5CC169169
2113TYRTYRTYRTYR5DD169169
1114ARGARGARGARG4BB6262
2114ARGARGARGARG4CC6262
3114ARGARGARGARG4DD6262
1115LYSLYSLYSLYS6BB5050
2115LYSLYSLYSLYS6CC5050
3115LYSLYSLYSLYS6DD5050
1116ARGARGARGARG2AA147147
2116ARGARGARGARG2CC147147
1117ARGARGARGARG1BB147147
2117ARGARGARGARG1DD147147
1118ARGARGGLYGLY5BB196 - 197196 - 197
2118ARGARGGLYGLY5CC196 - 197196 - 197
3118ARGARGGLYGLY5DD196 - 197196 - 197
1119THRTHRTHRTHR4BB203203
2119THRTHRTHRTHR4CC203203
1120GLUGLUGLUGLU3AA117117
2120GLUGLUGLUGLU3DD117117
1121ILEILEILEILE3AA8585
2121ILEILEILEILE3BB8585
3121ILEILEILEILE3CC8585
4121ILEILEILEILE3DD8585
1122GLUGLUHISHIS4AA100 - 101100 - 101
2122GLUGLUHISHIS4BB100 - 101100 - 101
3122GLUGLUHISHIS4CC100 - 101100 - 101
4122GLUGLUHISHIS4DD100 - 101100 - 101
1123SERSERMETMET1AA300 - 305300 - 305
2123SERSERMETMET1BB300 - 305300 - 305
3123SERSERMETMET1CC300 - 305300 - 305
4123SERSERMETMET1DD300 - 305300 - 305
5223LEULEULEULEU4AA293 - 299293 - 299
6223LEULEULEULEU4BB293 - 299293 - 299
7223LEULEULEULEU4CC293 - 299293 - 299
8223LEULEULEULEU4DD293 - 299293 - 299
1124ASPASPASPASP5AA292292
2124ASPASPASPASP5BB292292
3124ASPASPASPASP5CC292292
4124ASPASPASPASP5DD292292
1125LEULEUILEILE2AA185 - 192185 - 192
2125LEULEUILEILE2BB185 - 192185 - 192
3125LEULEUILEILE2CC185 - 192185 - 192
4125LEULEUILEILE2DD185 - 192185 - 192
5225ASPASPASPASP3AA184184
6225ASPASPASPASP3BB184184
7225ASPASPASPASP3CC184184
8225ASPASPASPASP3DD184184
1126TYRTYRTYRTYR6AA362362
2126TYRTYRTYRTYR6BB362362
3126TYRTYRTYRTYR6CC362362
4126TYRTYRTYRTYR6DD362362
5226SERSERVALVAL6AA368 - 370368 - 370
6226SERSERVALVAL6BB368 - 370368 - 370
7226SERSERVALVAL6CC368 - 370368 - 370
8226SERSERVALVAL6DD368 - 370368 - 370
9326GLUGLUSERSER6AA364 - 365364 - 365
10326GLUGLUSERSER6BB364 - 365364 - 365
11326GLUGLUSERSER6CC364 - 365364 - 365
12326GLUGLUSERSER6DD364 - 365364 - 365
1127ASPASPASPASP3AA8080
2127ASPASPASPASP3BB8080
3127ASPASPASPASP3CC8080
4127ASPASPASPASP3DD8080
1128LYSLYSTYRTYR5AA68 - 6968 - 69
2128LYSLYSTYRTYR5BB68 - 6968 - 69
3128LYSLYSTYRTYR5CC68 - 6968 - 69
4128LYSLYSTYRTYR5DD68 - 6968 - 69
5228PROPROILEILE2AA70 - 7170 - 71
6228PROPROILEILE2BB70 - 7170 - 71
7228PROPROILEILE2CC70 - 7170 - 71
8228PROPROILEILE2DD70 - 7170 - 71
9328HISHISASNASN2AA73 - 7873 - 78
10328HISHISASNASN2BB73 - 7873 - 78
11328HISHISASNASN2CC73 - 7873 - 78
12328HISHISASNASN2DD73 - 7873 - 78
1129THRTHRLEULEU5AA66 - 6766 - 67
2129THRTHRLEULEU5CC66 - 6766 - 67
3129THRTHRLEULEU5DD66 - 6766 - 67
1130GLUGLUGLUGLU3AA7272
2130GLUGLUGLUGLU3BB7272
3130GLUGLUGLUGLU3CC7272
4130GLUGLUGLUGLU3DD7272
5230THRTHRTHRTHR5AA148148
6230THRTHRTHRTHR5BB148148
7230THRTHRTHRTHR5CC148148
8230THRTHRTHRTHR5DD148148
9330ASPASPGLUGLU2AA211 - 214211 - 214
10330ASPASPGLUGLU2BB211 - 214211 - 214
11330ASPASPGLUGLU2CC211 - 214211 - 214
12330ASPASPGLUGLU2DD211 - 214211 - 214
13430ILEILEVALVAL2AA208 - 209208 - 209
14430ILEILEVALVAL2BB208 - 209208 - 209
15430ILEILEVALVAL2CC208 - 209208 - 209
16430ILEILEVALVAL2DD208 - 209208 - 209
17530LEULEUCYSCYS2AA216 - 217216 - 217
18530LEULEUCYSCYS2BB216 - 217216 - 217
19530LEULEUCYSCYS2CC216 - 217216 - 217
20530LEULEUCYSCYS2DD216 - 217216 - 217
21630ALAALAPHEPHE4AA220 - 223220 - 223
22630ALAALAPHEPHE4BB220 - 223220 - 223
23630ALAALAPHEPHE4CC220 - 223220 - 223
24630ALAALAPHEPHE4DD220 - 223220 - 223
25730VALVALVALVAL2AA219219
26730VALVALVALVAL2BB219219
27730VALVALVALVAL2CC219219
28730VALVALVALVAL2DD219219
1131GLUGLUGLUGLU3BB8383
2131GLUGLUGLUGLU3CC8383
3131GLUGLUGLUGLU3DD8383
1132ARGARGARGARG3AA210210
2132ARGARGARGARG3DD210210
1133GLUGLUGLUGLU2AA207207
2133GLUGLUGLUGLU2BB207207
3133GLUGLUGLUGLU2DD207207
1134LYSLYSLYSLYS5AA215215
2134LYSLYSLYSLYS5BB215215
3134LYSLYSLYSLYS5CC215215
1135ILEILETHRTHR4AA248 - 249248 - 249
2135ILEILETHRTHR4BB248 - 249248 - 249
3135ILEILETHRTHR4CC248 - 249248 - 249
4135ILEILETHRTHR4DD248 - 249248 - 249
5235ARGARGLEULEU2AA256 - 261256 - 261
6235ARGARGLEULEU2BB256 - 261256 - 261
7235ARGARGLEULEU2CC256 - 261256 - 261
8235ARGARGLEULEU2DD256 - 261256 - 261
9335ARGARGARGARG2AA254254
10335ARGARGARGARG2BB254254
11335ARGARGARGARG2CC254254
12335ARGARGARGARG2DD254254
13435ILEILEILEILE5AA250250
14435ILEILEILEILE5BB250250
15435ILEILEILEILE5CC250250
16435ILEILEILEILE5DD250250
17535GLYGLYGLYGLY4AA251251
18535GLYGLYGLYGLY4BB251251
19535GLYGLYGLYGLY4CC251251
20535GLYGLYGLYGLY4DD251251
21635ASNASNGLUGLU5AA252 - 253252 - 253
22635ASNASNGLUGLU5BB252 - 253252 - 253
23635ASNASNGLUGLU5CC252 - 253252 - 253
24635ASNASNGLUGLU5DD252 - 253252 - 253
25735GLNGLNMETMET2AA263 - 269263 - 269
26735GLNGLNMETMET2BB263 - 269263 - 269
27735GLNGLNMETMET2CC263 - 269263 - 269
28735GLNGLNMETMET2DD263 - 269263 - 269
1136PROPROSERSER6AA322 - 323322 - 323
2136PROPROSERSER6BB322 - 323322 - 323
3136PROPROSERSER6CC322 - 323322 - 323
4136PROPROSERSER6DD322 - 323322 - 323
5236LYSLYSLYSLYS5AA326326
6236LYSLYSLYSLYS5BB326326
7236LYSLYSLYSLYS5CC326326
8236LYSLYSLYSLYS5DD326326
9336ARGARGARGARG2AA335335
10336ARGARGARGARG2BB335335
11336ARGARGARGARG2CC335335
12336ARGARGARGARG2DD335335
13436LYSLYSLYSLYS3AA336336
14436LYSLYSLYSLYS3BB336336
15436LYSLYSLYSLYS3CC336336
16436LYSLYSLYSLYS3DD336336
17536ARGARGARGARG3AA2828
18536ARGARGARGARG3BB2828
19536ARGARGARGARG3CC2828
20536ARGARGARGARG3DD2828
21636ALAALAVALVAL2AA29 - 3029 - 30
22636ALAALAVALVAL2BB29 - 3029 - 30
23636ALAALAVALVAL2CC29 - 3029 - 30
24636ALAALAVALVAL2DD29 - 3029 - 30
25736PROPROILEILE2AA32 - 3432 - 34
26736PROPROILEILE2BB32 - 3432 - 34
27736PROPROILEILE2CC32 - 3432 - 34
28736PROPROILEILE2DD32 - 3432 - 34
1137ARGARGARGARG3AA183183
2137ARGARGARGARG3BB183183
3137ARGARGARGARG3CC183183
1138SERSERSERSER6AA233233
2138SERSERSERSER6BB233233
3138SERSERSERSER6CC233233
4138SERSERSERSER6DD233233
5238ALAALAGLYGLY2AA144 - 146144 - 146
6238ALAALAGLYGLY2BB144 - 146144 - 146
7238ALAALAGLYGLY2CC144 - 146144 - 146
8238ALAALAGLYGLY2DD144 - 146144 - 146
9338SERSERSERSER5AA234234
10338SERSERSERSER5BB234234
11338SERSERSERSER5CC234234
12338SERSERSERSER5DD234234
13438SERSERSERSER4AA235235
14438SERSERSERSER4BB235235
15438SERSERSERSER4CC235235
16438SERSERSERSER4DD235235
17538GLUGLUGLUGLU6AA361361
18538GLUGLUGLUGLU6BB361361
19538GLUGLUGLUGLU6CC361361
20538GLUGLUGLUGLU6DD361361
21638GLYGLYTYRTYR2AA158 - 166158 - 166
22638GLYGLYTYRTYR2BB158 - 166158 - 166
23638GLYGLYTYRTYR2CC158 - 166158 - 166
24638GLYGLYTYRTYR2DD158 - 166158 - 166
25738TYRTYRTYRTYR3AA143143
26738TYRTYRTYRTYR3BB143143
27738TYRTYRTYRTYR3CC143143
28738TYRTYRTYRTYR3DD143143
29838ASPASPASPASP3AA157157
30838ASPASPASPASP3BB157157
31838ASPASPASPASP3CC157157
32838ASPASPASPASP3DD157157
1139ASPASPASPASP6AA288288
2139ASPASPASPASP6BB288288
3139ASPASPASPASP6DD288288
1140ASPASPASPASP6CC286286
2140ASPASPASPASP6DD286286
1141ASPASPASPASP6AA286286
2141ASPASPASPASP6BB286286
1142LEULEULEULEU4AA193193
2142LEULEULEULEU4BB193193
3142LEULEULEULEU4CC193193
4142LEULEULEULEU4DD193193
5242THRTHRTHRTHR5AA194194
6242THRTHRTHRTHR5BB194194
7242THRTHRTHRTHR5CC194194
8242THRTHRTHRTHR5DD194194
9342ASPASPGLNGLN4AA244 - 246244 - 246
10342ASPASPGLNGLN4BB244 - 246244 - 246
11342ASPASPGLNGLN4CC244 - 246244 - 246
12342ASPASPGLNGLN4DD244 - 246244 - 246
13442GLUGLUGLUGLU3AA334334
14442GLUGLUGLUGLU3BB334334
15442GLUGLUGLUGLU3CC334334
16442GLUGLUGLUGLU3DD334334
17542ALAALAASNASN2AA114 - 115114 - 115
18542ALAALAASNASN2BB114 - 115114 - 115
19542ALAALAASNASN2CC114 - 115114 - 115
20542ALAALAASNASN2DD114 - 115114 - 115
21642LYSLYSLEULEU2AA238 - 242238 - 242
22642LYSLYSLEULEU2BB238 - 242238 - 242
23642LYSLYSLEULEU2CC238 - 242238 - 242
24642LYSLYSLEULEU2DD238 - 242238 - 242
25742ASNASNLEULEU2AA92 - 9492 - 94
26742ASNASNLEULEU2BB92 - 9492 - 94
27742ASNASNLEULEU2CC92 - 9492 - 94
28742ASNASNLEULEU2DD92 - 9492 - 94
29842TYRTYRTYRTYR5AA133133
30842TYRTYRTYRTYR5BB133133
31842TYRTYRTYRTYR5CC133133
32842TYRTYRTYRTYR5DD133133
1143GLNGLNGLNGLN2CC5959
2143GLNGLNGLNGLN2DD5959
1144LYSLYSLYSLYS2AA113113
2144LYSLYSLYSLYS2BB113113
3144LYSLYSLYSLYS2CC113113
4244PHEPHEPHEPHE3AA255255
5244PHEPHEPHEPHE3BB255255
6244PHEPHEPHEPHE3CC255255
7344METMETMETMET3AA283283
8344METMETMETMET3BB283283
9344METMETMETMET3CC283283
1145GLUGLUGLUGLU2AA237237
2145GLUGLUGLUGLU2BB237237
3145GLUGLUGLUGLU2DD237237
1146SERSERSERSER4BB199199
2146SERSERSERSER4CC199199
3146SERSERSERSER4DD199199
1147ALAALASERSER6AA230 - 232230 - 232
2147ALAALASERSER6DD230 - 232230 - 232
1148ALAALASERSER6BB230 - 232230 - 232
2148ALAALASERSER6CC230 - 232230 - 232
1149THRTHRMETMET6AA351 - 355351 - 355
2149THRTHRMETMET6DD351 - 355351 - 355
1150THRTHRMETMET6BB351 - 355351 - 355
2150THRTHRMETMET6CC351 - 355351 - 355
1151VALVALPROPRO4BB35 - 3835 - 38
2151VALVALPROPRO4CC35 - 3835 - 38
3151VALVALPROPRO4DD35 - 3835 - 38
1152PROPROPROPRO4BB243243
2152PROPROPROPRO4CC243243
3152PROPROPROPRO4DD243243
1153TYRTYRTYRTYR2AA9191
2153TYRTYRTYRTYR2DD9191
1154TYRTYRTYRTYR2BB9191
2154TYRTYRTYRTYR2CC9191
1155GLYGLYPROPRO6AA366 - 367366 - 367
2155GLYGLYPROPRO6CC366 - 367366 - 367
3155GLYGLYPROPRO6DD366 - 367366 - 367
1156ASPASPASPASP6AA363363
2156ASPASPASPASP6CC363363
3156ASPASPASPASP6DD363363
1157GLUGLUGLUGLU6CC9999
2157GLUGLUGLUGLU6DD9999
1158PHEPHETHRTHR3BB200 - 201200 - 201
2158PHEPHETHRTHR3CC200 - 201200 - 201
3158PHEPHETHRTHR3DD200 - 201200 - 201
1159ALAALAALAALA4BB204204
2159ALAALAALAALA4CC204204
1160ALAALAALAALA6AA204204
2160ALAALAALAALA6DD204204
1161THRTHRTHRTHR5BB202202
2161THRTHRTHRTHR5CC202202
3161THRTHRTHRTHR5DD202202
1162GLNGLNGLNGLN2AA121121
2162GLNGLNGLNGLN2CC121121
3162GLNGLNGLNGLN2DD121121
1163THRTHRTHRTHR3AA277277
2163THRTHRTHRTHR3BB277277
3163THRTHRTHRTHR3CC277277
4163THRTHRTHRTHR3DD277277
1164VALVALVALVAL2AA247247
2164VALVALVALVAL2BB247247
3164VALVALVALVAL2DD247247
1165VALVALVALVAL6AA287287
2165VALVALVALVAL6CC287287
3165VALVALVALVAL6DD287287
1166TYRTYRTYRTYR2AA218218
2166TYRTYRTYRTYR2DD218218
1167TYRTYRTYRTYR2BB218218
2167TYRTYRTYRTYR2CC218218
1168PHEPHEPHEPHE2AA262262
2168PHEPHEPHEPHE2BB262262
3168PHEPHEPHEPHE2DD262262
1169PHEPHEPHEPHE2AA3131
2169PHEPHEPHEPHE2CC3131
3169PHEPHEPHEPHE2DD3131
1170ILEILEILEILE2AA345345
2170ILEILEILEILE2CC345345
3170ILEILEILEILE2DD345345

NCS ensembles :
ID
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
DetailsThe molecules in the crystal are arranged as dimers: The second part for each of the four chains in the asymmetric unit is built as follows: For A chain apply operator x,-y,-z For C chain apply operator x,-y,-z B and D chain: x,y,z (i.e. within the asymmetric unit)

-
Components

#1: Protein
Actin, cytoplasmic 1 / / Beta-actin


Mass: 41814.660 Da / Num. of mol.: 4 / Source method: isolated from a natural source / Source: (natural) Bos taurus (cattle) / Organ: Calf thymus / References: UniProt: P60712
#2: Chemical
ChemComp-SO4 / SULFATE ION / Sulfate


Mass: 96.063 Da / Num. of mol.: 5 / Source method: obtained synthetically / Formula: SO4
#3: Chemical
ChemComp-CA / CALCIUM ION


Mass: 40.078 Da / Num. of mol.: 4 / Source method: obtained synthetically / Formula: Ca
#4: Chemical
ChemComp-ATP / ADENOSINE-5'-TRIPHOSPHATE / Adenosine triphosphate


Mass: 507.181 Da / Num. of mol.: 4 / Source method: obtained synthetically / Formula: C10H16N5O13P3 / Comment: ATP, energy-carrying molecule*YM
#5: Water ChemComp-HOH / water / Water


Mass: 18.015 Da / Num. of mol.: 502 / Source method: isolated from a natural source / Formula: H2O

-
Experimental details

-
Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

-
Sample preparation

CrystalDensity Matthews: 2.65 Å3/Da / Density % sol: 53.58 %
Crystal growTemperature: 277 K / Method: vapor diffusion, hanging drop / pH: 7.5
Details: 1.6 M (NH4)2SO4, 0.1 M HEPES, 0.1 M NaCl, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K

-
Data collection

DiffractionMean temperature: 100 K
Diffraction sourceSource: SYNCHROTRON / Site: SLS / Beamline: X06SA / Wavelength: 1 Å
DetectorType: MARMOSAIC 225 mm CCD / Detector: CCD / Date: Feb 11, 2006 / Details: Mirrors
RadiationMonochromator: LN2 cooled fixed-exit Si(111) / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 1 Å / Relative weight: 1
ReflectionResolution: 2.6→33.98 Å / Num. all: 52031 / Num. obs: 52031 / % possible obs: 94.7 % / Observed criterion σ(I): -3 / Redundancy: 3.6 % / Biso Wilson estimate: 39 Å2 / Rmerge(I) obs: 0.129 / Rsym value: 0.129 / Net I/σ(I): 9.34
Reflection shellResolution: 2.6→2.68 Å / Redundancy: 2.7 % / Rmerge(I) obs: 0.646 / Mean I/σ(I) obs: 1.72 / Num. unique all: 3616 / Rsym value: 0.646 / % possible all: 76.4

-
Processing

Software
NameVersionClassification
REFMAC5.2.0019refinement
MAR345data collection
XDSdata reduction
XSCALEdata scaling
PHASERphasing
RefinementMethod to determine structure: MOLECULAR REPLACEMENT
Starting model: PDB ENTRY 1J6Z
Resolution: 2.606→33.98 Å / Cor.coef. Fo:Fc: 0.937 / Cor.coef. Fo:Fc free: 0.881 / SU B: 26.145 / SU ML: 0.302 / Isotropic thermal model: Anisotropic TLS groups / Cross valid method: THROUGHOUT / ESU R: 1.479 / ESU R Free: 0.375 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
RfactorNum. reflection% reflectionSelection details
Rfree0.28812 2548 5 %RANDOM
Rwork0.20991 ---
all0.21383 50920 --
obs0.21383 48371 100 %-
Solvent computationIon probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: MASK
Displacement parametersBiso mean: 38.128 Å2
Baniso -1Baniso -2Baniso -3
1-5.95 Å20 Å20 Å2
2---2.01 Å20 Å2
3----3.94 Å2
Refine analyze
FreeObs
Luzzati coordinate error0.375 Å1.479 Å
Refinement stepCycle: LAST / Resolution: 2.606→33.98 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms11024 0 153 502 11679
Refine LS restraints
Refine-IDTypeDev idealDev ideal targetNumber
X-RAY DIFFRACTIONr_bond_refined_d0.010.02211426
X-RAY DIFFRACTIONr_angle_refined_deg1.3891.98115552
X-RAY DIFFRACTIONr_dihedral_angle_1_deg5.33351427
X-RAY DIFFRACTIONr_dihedral_angle_2_deg32.38724.072474
X-RAY DIFFRACTIONr_dihedral_angle_3_deg17.186151835
X-RAY DIFFRACTIONr_dihedral_angle_4_deg16.1961563
X-RAY DIFFRACTIONr_chiral_restr0.0880.21742
X-RAY DIFFRACTIONr_gen_planes_refined0.0040.028565
X-RAY DIFFRACTIONr_nbd_refined0.2070.25160
X-RAY DIFFRACTIONr_nbtor_refined0.3070.27807
X-RAY DIFFRACTIONr_xyhbond_nbd_refined0.170.2478
X-RAY DIFFRACTIONr_metal_ion_refined0.1330.24
X-RAY DIFFRACTIONr_symmetry_vdw_refined0.2180.297
X-RAY DIFFRACTIONr_symmetry_hbond_refined0.1910.215
X-RAY DIFFRACTIONr_mcbond_it0.3281.57297
X-RAY DIFFRACTIONr_mcangle_it0.553211521
X-RAY DIFFRACTIONr_scbond_it1.0734691
X-RAY DIFFRACTIONr_scangle_it1.7014.54028
Refine LS restraints NCS

Refine-ID: X-RAY DIFFRACTION

Ens-IDDom-IDAuth asym-IDNumberTypeRms dev position (Å)Weight position
11A666tight positional0.040.05
12B666tight positional0.040.05
13C666tight positional0.040.05
14D666tight positional0.040.05
21B4tight positional0.010.05
22C4tight positional0.010.05
23D4tight positional0.010.05
31A4tight positional0.030.05
71A4tight positional0.020.05
101A4tight positional0.020.05
111B4tight positional0.010.05
161A4tight positional0.020.05
171B11tight positional0.030.05
201A4tight positional00.05
211A4tight positional0.020.05
212B4tight positional0.010.05
213C4tight positional0.010.05
214D4tight positional0.030.05
231A36tight positional0.030.05
232B36tight positional0.040.05
233C36tight positional0.040.05
234D36tight positional0.030.05
251A36tight positional0.030.05
252B36tight positional0.030.05
253C36tight positional0.020.05
254D36tight positional0.030.05
271A4tight positional0.010.05
272B4tight positional0.010.05
273C4tight positional0.010.05
274D4tight positional0.030.05
281A32tight positional0.040.05
282B32tight positional0.030.05
283C32tight positional0.040.05
284D32tight positional0.030.05
301A40tight positional0.040.05
302B40tight positional0.030.05
303C40tight positional0.040.05
304D40tight positional0.040.05
311B4tight positional0.020.05
312C4tight positional0.010.05
313D4tight positional0.020.05
321A4tight positional0.010.05
331A4tight positional0.030.05
332B4tight positional0.030.05
333D4tight positional0.010.05
351A56tight positional0.040.05
352B56tight positional0.030.05
353C56tight positional0.030.05
354D56tight positional0.040.05
361A32tight positional0.040.05
362B32tight positional0.040.05
363C32tight positional0.040.05
364D32tight positional0.040.05
371A4tight positional0.010.05
372B4tight positional0.010.05
373C4tight positional0.010.05
381A56tight positional0.040.05
382B56tight positional0.030.05
383C56tight positional0.030.05
384D56tight positional0.040.05
421A44tight positional0.040.05
422B44tight positional0.040.05
423C44tight positional0.040.05
424D44tight positional0.040.05
431C4tight positional0.030.05
441A12tight positional0.050.05
442B12tight positional0.050.05
443C12tight positional0.070.05
451A4tight positional0.030.05
452B4tight positional0.030.05
453D4tight positional0.030.05
531A4tight positional0.030.05
541B4tight positional0.030.05
581B8tight positional0.030.05
582C8tight positional0.030.05
583D8tight positional0.040.05
621A4tight positional0.020.05
622C4tight positional0.020.05
623D4tight positional0.020.05
631A4tight positional0.050.05
632B4tight positional0.020.05
633C4tight positional0.020.05
634D4tight positional0.020.05
641A4tight positional0.010.05
642B4tight positional0.020.05
643D4tight positional0.020.05
661A4tight positional0.020.05
671B4tight positional0.020.05
681A4tight positional0.020.05
682B4tight positional0.020.05
683D4tight positional0.020.05
691A4tight positional0.020.05
692C4tight positional0.020.05
693D4tight positional0.010.05
701A4tight positional0.020.05
702C4tight positional0.010.05
703D4tight positional0.010.05
11A407medium positional0.110.1
12B407medium positional0.10.1
13C407medium positional0.10.1
14D407medium positional0.10.1
31A3medium positional0.050.1
41A5medium positional0.290.1
51B5medium positional0.010.1
71A6medium positional0.030.1
111B5medium positional0.030.1
121A4medium positional0.040.1
131C4medium positional0.020.1
141B11medium positional0.080.1
142C11medium positional0.10.1
143D11medium positional0.070.1
161A7medium positional0.090.1
181B8medium positional0.070.1
182C8medium positional0.030.1
183D8medium positional0.090.1
191B7medium positional0.040.1
221A16medium positional0.060.1
222B16medium positional0.040.1
223C16medium positional0.040.1
224D16medium positional0.060.1
231A55medium positional0.070.1
232B55medium positional0.070.1
233C55medium positional0.060.1
234D55medium positional0.080.1
241A4medium positional0.010.1
242B4medium positional0.020.1
243C4medium positional0.010.1
244D4medium positional0.010.1
251A35medium positional0.070.1
252B35medium positional0.090.1
253C35medium positional0.10.1
254D35medium positional0.090.1
281A33medium positional0.10.1
282B33medium positional0.090.1
283C33medium positional0.10.1
284D33medium positional0.10.1
291A8medium positional0.050.1
292C8medium positional0.060.1
293D8medium positional0.040.1
301A70medium positional0.090.1
302B70medium positional0.10.1
303C70medium positional0.10.1
304D70medium positional0.10.1
331A5medium positional0.040.1
332B5medium positional0.040.1
333D5medium positional0.030.1
341A4medium positional0.020.1
342B4medium positional0.020.1
343C4medium positional0.020.1
351A79medium positional0.080.1
352B79medium positional0.070.1
353C79medium positional0.080.1
354D79medium positional0.090.1
361A24medium positional0.090.1
362B24medium positional0.090.1
363C24medium positional0.10.1
364D24medium positional0.090.1
381A46medium positional0.090.1
382B46medium positional0.080.1
383C46medium positional0.090.1
384D46medium positional0.080.1
421A77medium positional0.10.1
422B77medium positional0.10.1
423C77medium positional0.090.1
424D77medium positional0.080.1
431C5medium positional0.080.1
441A1medium positional0.040.1
442B1medium positional0.090.1
443C1medium positional0.080.1
451A5medium positional0.060.1
452B5medium positional0.10.1
453D5medium positional0.060.1
461B6medium positional0.040.1
462C6medium positional0.050.1
463D6medium positional0.020.1
511B29medium positional0.060.1
512C29medium positional0.050.1
513D29medium positional0.070.1
521B7medium positional0.020.1
522C7medium positional0.030.1
523D7medium positional0.040.1
531A8medium positional0.030.1
541B8medium positional0.050.1
591B5medium positional0.020.1
611B4medium positional0.030.1
612C4medium positional0.010.1
613D4medium positional0.020.1
621A5medium positional0.060.1
622C5medium positional0.040.1
623D5medium positional0.070.1
641A1medium positional0.030.1
642B1medium positional0.010.1
643D1medium positional0.040.1
661A8medium positional0.020.1
671B8medium positional0.080.1
681A7medium positional0.040.1
682B7medium positional0.040.1
683D7medium positional0.020.1
691A7medium positional0.010.1
692C7medium positional0.030.1
693D7medium positional0.030.1
701A4medium positional0.070.1
702C4medium positional0.070.1
703D4medium positional0.030.1
11A101loose positional0.591.5
12B101loose positional0.41.5
13C101loose positional0.571.5
14D101loose positional0.31.5
21B7loose positional0.361.5
22C7loose positional0.361.5
23D7loose positional0.541.5
61A5loose positional0.291.5
62B5loose positional0.211.5
63C5loose positional0.361.5
88D31loose positional0.121.5
88A31loose positional0.251.5
88B31loose positional0.141.5
88C31loose positional0.161.5
91A14loose positional0.031.5
101A5loose positional0.31.5
121A8loose positional0.161.5
131C8loose positional0.131.5
151B9loose positional0.421.5
152C9loose positional0.311.5
153D9loose positional0.531.5
181B7loose positional0.661.5
182C7loose positional0.421.5
183D7loose positional0.451.5
201A5loose positional0.091.5
211A4loose positional0.151.5
212B4loose positional0.141.5
213C4loose positional0.291.5
214D4loose positional0.121.5
241A4loose positional0.661.5
242B4loose positional0.581.5
243C4loose positional0.561.5
244D4loose positional0.981.5
251A4loose positional0.191.5
252B4loose positional0.221.5
253C4loose positional0.321.5
254D4loose positional0.221.5
261A44loose positional0.441.5
262B44loose positional0.411.5
263C44loose positional0.491.5
264D44loose positional0.391.5
271A4loose positional0.751.5
272B4loose positional0.221.5
273C4loose positional0.231.5
274D4loose positional0.581.5
281A9loose positional0.091.5
282B9loose positional0.181.5
283C9loose positional0.271.5
284D9loose positional0.351.5
291A7loose positional0.341.5
292C7loose positional0.391.5
293D7loose positional0.211.5
301A3loose positional0.261.5
302B3loose positional0.141.5
303C3loose positional0.471.5
304D3loose positional0.341.5
311B5loose positional0.811.5
312C5loose positional0.511.5
313D5loose positional0.471.5
321A7loose positional0.661.5
341A5loose positional0.671.5
342B5loose positional0.321.5
343C5loose positional0.421.5
351A12loose positional0.311.5
352B12loose positional0.341.5
353C12loose positional0.281.5
354D12loose positional0.761.5
361A25loose positional0.591.5
362B25loose positional0.411.5
363C25loose positional0.611.5
364D25loose positional0.351.5
371A1loose positional0.011.5
372B1loose positional0.031.5
373C1loose positional0.021.5
381A29loose positional0.631.5
382B29loose positional0.391.5
383C29loose positional0.591.5
384D29loose positional0.841.5
391A8loose positional0.311.5
392B8loose positional0.111.5
393D8loose positional0.311.5
401C8loose positional0.471.5
411A8loose positional0.331.5
421A16loose positional0.861.5
422B16loose positional0.761.5
423C16loose positional0.531.5
424D16loose positional0.561.5
441A11loose positional0.61.5
442B11loose positional0.971.5
443C11loose positional0.581.5
471A16loose positional0.231.5
481B15loose positional0.111.5
491A41loose positional0.311.5
501B43loose positional0.31.5
551A11loose positional0.141.5
552C11loose positional0.191.5
553D11loose positional0.111.5
561A8loose positional0.021.5
562C8loose positional0.091.5
563D8loose positional0.091.5
571C9loose positional0.11.5
581B10loose positional1.251.5
582C10loose positional0.641.5
583D10loose positional0.81.5
601A5loose positional0.011.5
611B3loose positional1.011.5
612C3loose positional0.421.5
613D3loose positional0.621.5
631A3loose positional1.11.5
632B3loose positional1.061.5
633C3loose positional1.021.5
634D3loose positional1.021.5
651A7loose positional0.041.5
652C7loose positional0.061.5
653D7loose positional0.081.5
11A666tight thermal0.070.5
12B666tight thermal0.070.5
13C666tight thermal0.070.5
14D666tight thermal0.070.5
21B4tight thermal0.050.5
22C4tight thermal0.030.5
23D4tight thermal0.040.5
31A4tight thermal0.060.5
71A4tight thermal0.050.5
101A4tight thermal0.080.5
111B4tight thermal0.070.5
161A4tight thermal0.030.5
171B11tight thermal0.060.5
201A4tight thermal0.080.5
211A4tight thermal0.030.5
212B4tight thermal0.020.5
213C4tight thermal0.020.5
214D4tight thermal0.030.5
231A36tight thermal0.090.5
232B36tight thermal0.080.5
233C36tight thermal0.080.5
234D36tight thermal0.070.5
251A36tight thermal0.060.5
252B36tight thermal0.060.5
253C36tight thermal0.070.5
254D36tight thermal0.060.5
271A4tight thermal0.050.5
272B4tight thermal0.030.5
273C4tight thermal0.050.5
274D4tight thermal0.060.5
281A32tight thermal0.050.5
282B32tight thermal0.060.5
283C32tight thermal0.070.5
284D32tight thermal0.060.5
301A40tight thermal0.080.5
302B40tight thermal0.070.5
303C40tight thermal0.070.5
304D40tight thermal0.070.5
311B4tight thermal0.080.5
312C4tight thermal0.020.5
313D4tight thermal0.090.5
321A4tight thermal0.040.5
331A4tight thermal0.060.5
332B4tight thermal0.040.5
333D4tight thermal0.040.5
351A56tight thermal0.060.5
352B56tight thermal0.060.5
353C56tight thermal0.060.5
354D56tight thermal0.070.5
361A32tight thermal0.070.5
362B32tight thermal0.070.5
363C32tight thermal0.050.5
364D32tight thermal0.070.5
371A4tight thermal0.150.5
372B4tight thermal0.070.5
373C4tight thermal0.10.5
381A56tight thermal0.080.5
382B56tight thermal0.060.5
383C56tight thermal0.060.5
384D56tight thermal0.060.5
421A44tight thermal0.060.5
422B44tight thermal0.050.5
423C44tight thermal0.050.5
424D44tight thermal0.060.5
431C4tight thermal0.080.5
441A12tight thermal0.080.5
442B12tight thermal0.070.5
443C12tight thermal0.090.5
451A4tight thermal0.060.5
452B4tight thermal0.050.5
453D4tight thermal0.050.5
531A4tight thermal0.050.5
541B4tight thermal0.040.5
581B8tight thermal0.070.5
582C8tight thermal0.070.5
583D8tight thermal0.090.5
621A4tight thermal0.080.5
622C4tight thermal0.110.5
623D4tight thermal0.050.5
631A4tight thermal0.030.5
632B4tight thermal0.060.5
633C4tight thermal0.040.5
634D4tight thermal0.080.5
641A4tight thermal0.030.5
642B4tight thermal0.040.5
643D4tight thermal0.040.5
661A4tight thermal0.090.5
671B4tight thermal0.150.5
681A4tight thermal0.070.5
682B4tight thermal0.120.5
683D4tight thermal0.090.5
691A4tight thermal0.090.5
692C4tight thermal0.060.5
693D4tight thermal0.040.5
701A4tight thermal0.050.5
702C4tight thermal0.050.5
703D4tight thermal0.040.5
11A407medium thermal0.452
12B407medium thermal0.432
13C407medium thermal0.422
14D407medium thermal0.42
31A3medium thermal0.182
41A5medium thermal0.282
51B5medium thermal0.792
71A6medium thermal0.362
111B5medium thermal0.312
121A4medium thermal0.242
131C4medium thermal0.392
141B11medium thermal0.242
142C11medium thermal0.352
143D11medium thermal0.382
161A7medium thermal0.892
181B8medium thermal0.282
182C8medium thermal0.362
183D8medium thermal0.172
191B7medium thermal0.242
221A16medium thermal0.552
222B16medium thermal0.522
223C16medium thermal0.762
224D16medium thermal0.352
231A55medium thermal0.442
232B55medium thermal0.52
233C55medium thermal0.362
234D55medium thermal0.52
241A4medium thermal0.12
242B4medium thermal0.132
243C4medium thermal0.312
244D4medium thermal0.472
251A35medium thermal0.442
252B35medium thermal0.362
253C35medium thermal0.292
254D35medium thermal0.332
281A33medium thermal0.352
282B33medium thermal0.292
283C33medium thermal0.342
284D33medium thermal0.32
291A8medium thermal0.142
292C8medium thermal0.132
293D8medium thermal0.112
301A70medium thermal0.52
302B70medium thermal0.372
303C70medium thermal0.412
304D70medium thermal0.462
331A5medium thermal0.542
332B5medium thermal0.252
333D5medium thermal0.52
341A4medium thermal0.112
342B4medium thermal0.132
343C4medium thermal0.222
351A79medium thermal0.472
352B79medium thermal0.442
353C79medium thermal0.382
354D79medium thermal0.472
361A24medium thermal0.512
362B24medium thermal0.512
363C24medium thermal0.242
364D24medium thermal0.452
381A46medium thermal0.352
382B46medium thermal0.382
383C46medium thermal0.342
384D46medium thermal0.42
421A77medium thermal0.322
422B77medium thermal0.272
423C77medium thermal0.42
424D77medium thermal0.352
431C5medium thermal0.232
441A1medium thermal0.172
442B1medium thermal0.242
443C1medium thermal0.062
451A5medium thermal0.92
452B5medium thermal0.522
453D5medium thermal0.732
461B6medium thermal0.212
462C6medium thermal0.242
463D6medium thermal0.042
511B29medium thermal0.332
512C29medium thermal0.222
513D29medium thermal0.312
521B7medium thermal0.222
522C7medium thermal0.262
523D7medium thermal0.092
531A8medium thermal0.112
541B8medium thermal0.392
591B5medium thermal0.22
611B4medium thermal0.272
612C4medium thermal0.462
613D4medium thermal0.712
621A5medium thermal0.72
622C5medium thermal0.552
623D5medium thermal0.272
641A1medium thermal0.112
642B1medium thermal0.142
643D1medium thermal0.032
661A8medium thermal0.512
671B8medium thermal0.272
681A7medium thermal0.632
682B7medium thermal0.412
683D7medium thermal0.712
691A7medium thermal0.722
692C7medium thermal0.472
693D7medium thermal0.382
701A4medium thermal0.432
702C4medium thermal0.452
703D4medium thermal0.312
11A101loose thermal1.2710
12B101loose thermal1.4710
13C101loose thermal1.4710
14D101loose thermal1.5710
21B7loose thermal1.1310
22C7loose thermal1.4210
23D7loose thermal2.4810
61A5loose thermal1.0110
62B5loose thermal0.0910
63C5loose thermal0.9910
88D31loose thermal3.9610
88A31loose thermal1.4310
88B31loose thermal4.4510
88C31loose thermal1.9210
91A14loose thermal0.3710
101A5loose thermal1.8210
121A8loose thermal0.610
131C8loose thermal0.7910
151B9loose thermal1.610
152C9loose thermal1.910
153D9loose thermal0.5110
181B7loose thermal0.6410
182C7loose thermal1.8210
183D7loose thermal1.5310
201A5loose thermal0.610
211A4loose thermal0.6410
212B4loose thermal0.310
213C4loose thermal0.7410
214D4loose thermal1.0410
241A4loose thermal0.4810
242B4loose thermal0.3410
243C4loose thermal0.5210
244D4loose thermal0.3110
251A4loose thermal0.9510
252B4loose thermal1.1910
253C4loose thermal1.4210
254D4loose thermal1.5410
261A44loose thermal3.9110
262B44loose thermal0.810
263C44loose thermal2.2710
264D44loose thermal1.610
271A4loose thermal1.0810
272B4loose thermal0.9710
273C4loose thermal0.5710
274D4loose thermal0.3710
281A9loose thermal0.8910
282B9loose thermal0.3110
283C9loose thermal0.4610
284D9loose thermal0.8310
291A7loose thermal0.610
292C7loose thermal0.3310
293D7loose thermal0.410
301A3loose thermal0.710
302B3loose thermal0.6310
303C3loose thermal0.1410
304D3loose thermal0.110
311B5loose thermal0.6410
312C5loose thermal210
313D5loose thermal2.4110
321A7loose thermal0.5710
341A5loose thermal0.2110
342B5loose thermal0.7510
343C5loose thermal0.6810
351A12loose thermal0.5210
352B12loose thermal0.2310
353C12loose thermal0.8410
354D12loose thermal0.8910
361A25loose thermal1.1610
362B25loose thermal0.6110
363C25loose thermal0.5810
364D25loose thermal1.0410
371A1loose thermal0.7510
372B1loose thermal0.4410
373C1loose thermal0.310
381A29loose thermal2.4510
382B29loose thermal2.0610
383C29loose thermal1.3310
384D29loose thermal1.6210
391A8loose thermal0.2610
392B8loose thermal0.510
393D8loose thermal0.310
401C8loose thermal0.5510
411A8loose thermal0.3110
421A16loose thermal1.910
422B16loose thermal1.4610
423C16loose thermal1.6810
424D16loose thermal1.5810
441A11loose thermal1.7410
442B11loose thermal1.0710
443C11loose thermal1.1910
471A16loose thermal0.5910
481B15loose thermal0.2910
491A41loose thermal0.610
501B43loose thermal0.9110
551A11loose thermal5.2510
552C11loose thermal2.6310
553D11loose thermal2.6410
561A8loose thermal2.9910
562C8loose thermal1.7710
563D8loose thermal1.2210
571C9loose thermal1.5910
581B10loose thermal0.7310
582C10loose thermal0.8410
583D10loose thermal1.4910
601A5loose thermal0.0410
611B3loose thermal0.3210
612C3loose thermal0.2810
613D3loose thermal0.5810
631A3loose thermal0.7610
632B3loose thermal0.210
633C3loose thermal0.2410
634D3loose thermal0.6410
651A7loose thermal0.2310
652C7loose thermal0.3410
653D7loose thermal0.5710
LS refinement shellResolution: 2.606→2.674 Å / Total num. of bins used: 20
RfactorNum. reflection% reflection
Rfree0.371 130 -
Rwork0.279 2592 -
obs--100 %
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
14.20340.2465-1.25544.1487-0.71954.18570.0507-0.08830.29160.17550.0463-0.2392-0.19070.552-0.097-0.0865-0.0480.0075-0.1418-0.0122-0.238760.286-7.0981-15.8259
216.8119-3.20110.61828.23482.823913.8686-0.39070.1712-0.0104-1.02820.38960.1250.41170.10620.0010.11790.12680.0149-0.0932-0.0411-0.198967.9594-23.5761-29.0579
32.27640.91170.50814.72312.37653.1744-0.01460.0342-0.20190.04970.050.04740.4135-0.2496-0.0354-0.0675-0.11530.0637-0.15130.0587-0.186643.1134-27.3823-10.8087
44.53790.23950.64853.9420.30933.981-0.12920.0673-0.303-0.04370.1897-0.33910.45070.5597-0.0606-0.06110.1023-0.0206-0.098-0.0139-0.16190.3754-49.046912.6903
515.68132.1275-2.17149.41472.161513.4575-0.7390.0414-0.32430.09240.6369-0.3634-0.08760.92540.10210.0569-0.06270.01120.0169-0.0452-0.227196.927-31.905525.6641
62.5152-2.2039-1.17395.72572.28593.9995-0.02230.056-0.0007-0.17670.03880.1075-0.244-0.0436-0.0165-0.18450.0152-0.0595-0.16070.0671-0.186872.4629-29.32026.471
73.3361-0.4762-1.07362.68410.13343.28740.0107-0.10360.18770.21620.0739-0.2184-0.07020.3467-0.0846-0.0037-0.0677-0.0241-0.1254-0.0489-0.1381121.4291-7.0601-15.8751
89.3553-0.4631-2.937112.595.106511.5379-0.3002-0.15730.3719-0.3375-0.0585-0.4874-0.17340.21380.35870.16150.1302-0.0981-0.1176-0.0635-0.086127.8279-23.6659-29.7239
92.56831.47330.99234.09881.85724.39930.1442-0.1737-0.16110.3937-0.0503-0.08360.5189-0.3126-0.09390.0709-0.0748-0.0172-0.14480.0879-0.1402104.0402-27.2519-9.6719
103.7299-0.287-0.67453.15890.00083.13220.1224-0.01780.20990.06960.0923-0.1345-0.28030.3366-0.2147-0.0138-0.07790.0582-0.1373-0.06-0.160791.5726-63.4169-19.0043
1114.4486-4.56780.79838.74425.272315.8536-0.26420.1690.05430.02730.1347-0.0916-0.08220.36120.12940.01650.06730.083-0.0637-0.0304-0.206699.4826-79.6196-32.678
122.35621.01720.47974.56341.51373.02670.0407-0.006-0.08850.22880.06140.08570.2894-0.1355-0.1022-0.158-0.03260.0383-0.15480.0404-0.16674.8067-84.1224-13.7751
Refinement TLS group
IDRefine-IDRefine TLS-IDAuth asym-IDLabel asym-IDAuth seq-IDLabel seq-ID
1X-RAY DIFFRACTION1AA6 - 346 - 34
2X-RAY DIFFRACTION1AA70 - 14570 - 145
3X-RAY DIFFRACTION1AA334 - 371334 - 371
4X-RAY DIFFRACTION2AA35 - 6935 - 69
5X-RAY DIFFRACTION3AA146 - 333146 - 333
6X-RAY DIFFRACTION4BB6 - 346 - 34
7X-RAY DIFFRACTION4BB70 - 14570 - 145
8X-RAY DIFFRACTION4BB334 - 371334 - 371
9X-RAY DIFFRACTION5BB35 - 6935 - 69
10X-RAY DIFFRACTION6BB146 - 333146 - 333
11X-RAY DIFFRACTION7CC6 - 346 - 34
12X-RAY DIFFRACTION7CC70 - 14570 - 145
13X-RAY DIFFRACTION7CC334 - 371334 - 371
14X-RAY DIFFRACTION8CC35 - 6935 - 69
15X-RAY DIFFRACTION9CC146 - 333146 - 333
16X-RAY DIFFRACTION10DD6 - 346 - 34
17X-RAY DIFFRACTION10DD70 - 14570 - 145
18X-RAY DIFFRACTION10DD334 - 371334 - 371
19X-RAY DIFFRACTION11DD35 - 6935 - 69
20X-RAY DIFFRACTION12DD146 - 333146 - 333

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