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Yorodumi- PDB-2n47: EC-NMR Structure of Synechocystis sp. PCC 6803 Slr1183 Determined... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2n47 | ||||||
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Title | EC-NMR Structure of Synechocystis sp. PCC 6803 Slr1183 Determined by Combining Evolutionary Couplings (EC) and Sparse NMR Data. Northeast Structural Genomics Consortium target SgR145 | ||||||
Components | Slr1183 protein | ||||||
Keywords | STRUCTURAL GENOMICS / UNKNOWN FUNCTION / EC-NMR / NORTHEAST STRUCTURAL GENOMICS CONSORTIUM / NESG / Protein Structure Initiative / PSI-Biology | ||||||
Function / homology | Methyltransferase domain 25 / Methyltransferase domain / Vaccinia Virus protein VP39 / transferase activity / S-adenosyl-L-methionine-dependent methyltransferase superfamily / Rossmann fold / 3-Layer(aba) Sandwich / Alpha Beta / Slr1183 protein Function and homology information | ||||||
Biological species | Synechocystis sp. PCC 6803 substr. Kazusa (bacteria) | ||||||
Method | SOLUTION NMR / torsion angle dynamics | ||||||
Model details | lowest energy, model1 | ||||||
Authors | Tang, Y. / Huang, Y.J. / Hopf, T.A. / Sander, C. / Marks, D. / Montelione, G.T. / Northeast Structural Genomics Consortium (NESG) | ||||||
Citation | Journal: Proc.Natl.Acad.Sci.USA / Year: 2012 Title: Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples. Authors: Lange, O.F. / Rossi, P. / Sgourakis, N.G. / Song, Y. / Lee, H.W. / Aramini, J.M. / Ertekin, A. / Xiao, R. / Acton, T.B. / Montelione, G.T. / Baker, D. | ||||||
History |
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Remark 0 | THIS ENTRY 2N47 REFLECTS AN ALTERNATIVE MODELING OF THE ORIGINAL STRUCTURAL DATA IN 2KW5 DETERMINED ...THIS ENTRY 2N47 REFLECTS AN ALTERNATIVE MODELING OF THE ORIGINAL STRUCTURAL DATA IN 2KW5 DETERMINED BY AUTHORS: P.ROSSI,F.FOROUHAR,H.LEE,O.LANGE,B.MAO,A.LEMAK,M.MAGLAQUI,R.BELOTE,C.CICCOSANTI,E.FOOTE,S.SAHDEV,T.ACTON,R.XIAO,J.EVERETT,D.BAKER,G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) |
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2n47.cif.gz | 1.1 MB | Display | PDBx/mmCIF format |
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PDB format | pdb2n47.ent.gz | 989.9 KB | Display | PDB format |
PDBx/mmJSON format | 2n47.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/n4/2n47 ftp://data.pdbj.org/pub/pdb/validation_reports/n4/2n47 | HTTPS FTP |
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-Related structure data
Related structure data | 2n42C 2n44C 2n45C 2n46C 2n48C 2n49C 2n4aC 2n4bC 2n4cC 2n4dC 2n4fC C: citing same article (ref.) |
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Similar structure data | |
Other databases |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 22403.258 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Synechocystis sp. PCC 6803 substr. Kazusa (bacteria) Strain: PCC 6803 / Kazusa / Gene: slr1183 / Production host: Escherichia coli (E. coli) / References: UniProt: P74712 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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NMR details | Text: AUTHOR USED THE EXPERIMENTAL DATA FROM ENTRY 2KW5. |
-Processing
NMR software |
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Refinement | Method: torsion angle dynamics / Software ordinal: 1 Details: Protons from the Rosetta models were removed and added back using Reduce. | |||||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | |||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: lowest energy / Conformers calculated total number: 100 / Conformers submitted total number: 20 / Representative conformer: 1 |