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- PDB-2mne: Recognition complex of DNA d(CGACTAGTCG)2 with thiazotropsin anal... -
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Open data
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Basic information
Entry | Database: PDB / ID: 2mne | ||||||||||||||||||||||
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Title | Recognition complex of DNA d(CGACTAGTCG)2 with thiazotropsin analogue AIK-18/51 | ||||||||||||||||||||||
![]() | 5'-D(*![]() DNA / THIAZOTROPSINS / DNA RECOGNITION / ISOTHERMAL TITRATION CALORIMETRY NMR / SELF-ASSEMBLY / MINOR GROOVE BINDER | Function / homology | AIK-18/51 / DNA | ![]() Method | SOLUTION NMR / molecular dynamics | Model details | minimized average structure, model 1 | Model type details | minimized average | ![]() Alniss, H.Y. / Salvia, M.-V. / Sadikov, M. / Golovchenko, I. / Anthony, N.G. / Khalaf, A.I. / Mackay, S.P. / Suckling, C.J. / Parkinson, J.A. | ![]() ![]() Title: Recognition of the DNA minor groove by thiazotropsin analogues. Authors: Alniss, H.Y. / Salvia, M.V. / Sadikov, M. / Golovchenko, I. / Anthony, N.G. / Khalaf, A.I. / MacKay, S.P. / Suckling, C.J. / Parkinson, J.A. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 30.3 KB | Display | ![]() |
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PDB format | ![]() | 18 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
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-Validation report
Summary document | ![]() | 454 KB | Display | ![]() |
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Full document | ![]() | 484.2 KB | Display | |
Data in XML | ![]() | 5.8 KB | Display | |
Data in CIF | ![]() | 7.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 2mnbC ![]() 2mndC ![]() 2mnfC C: citing same article ( |
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Similar structure data | |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: DNA chain | Mass: 3045.005 Da / Num. of mol.: 2 / Source method: obtained synthetically #2: Chemical | |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
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NMR experiment |
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Sample preparation
Details | Contents: 2 mM AIK-18/51, 2 mM 5'-D(*CP*GP*AP*CP*TP*AP*GP*TP*CP*G)-3', 90% H2O/10% D2O Solvent system: 90% H2O/10% D2O | |||||||||
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Sample |
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Sample conditions | Ionic strength: 0.05 / pH: 7.4 / Pressure: ambient / Temperature: 298 K |
-NMR measurement
NMR spectrometer | Type: Bruker Avance / Manufacturer: Bruker / Model: AVANCE / Field strength: 600 MHz |
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Processing
NMR software |
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Refinement | Method: molecular dynamics / Software ordinal: 1 | ||||||||||||||||||||||||||||||||||||||||||||||||
NMR constraints | NOE constraints total: 756 / NOE intraresidue total count: 336 / NOE sequential total count: 123 | ||||||||||||||||||||||||||||||||||||||||||||||||
NMR representative | Selection criteria: minimized average structure | ||||||||||||||||||||||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the least restraint violations Conformers calculated total number: 1 / Conformers submitted total number: 1 |