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- PDB-1aal: STRUCTURAL EFFECTS INDUCED BY MUTAGENESIS AFFECTED BY CRYSTAL PAC... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1aal | ||||||
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Title | STRUCTURAL EFFECTS INDUCED BY MUTAGENESIS AFFECTED BY CRYSTAL PACKING FACTORS: THE STRUCTURE OF A 30-51 DISULFIDE MUTANT OF BASIC PANCREATIC TRYPSIN INHIBITOR | ||||||
![]() | BOVINE PANCREATIC TRYPSIN INHIBITOR | ||||||
![]() | SERINE PROTEASE INHIBITOR | ||||||
Function / homology | ![]() trypsinogen activation / negative regulation of serine-type endopeptidase activity / sulfate binding / negative regulation of platelet aggregation / potassium channel inhibitor activity / zymogen binding / molecular function inhibitor activity / negative regulation of thrombin-activated receptor signaling pathway / serine protease inhibitor complex / serine-type endopeptidase inhibitor activity ...trypsinogen activation / negative regulation of serine-type endopeptidase activity / sulfate binding / negative regulation of platelet aggregation / potassium channel inhibitor activity / zymogen binding / molecular function inhibitor activity / negative regulation of thrombin-activated receptor signaling pathway / serine protease inhibitor complex / serine-type endopeptidase inhibitor activity / protease binding / calcium ion binding / extracellular space Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() | ||||||
![]() | Eigenbrot, C. / Randal, M. / Kossiakoff, A.A. | ||||||
![]() | ![]() Title: Structural effects induced by mutagenesis affected by crystal packing factors: the structure of a 30-51 disulfide mutant of basic pancreatic trypsin inhibitor. Authors: Eigenbrot, C. / Randal, M. / Kossiakoff, A.A. #1: ![]() Title: Structural Effects Induced by Removal of a Disulfide Bridge: The X-Ray Structure of the C30A(Slash)C51A Mutant of Basic Pancreatic Trypsin Inhibitor at 1.6 Angstroms Authors: Eigenbrot, C. / Randal, M. / Kossiakoff, A.A. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 35 KB | Display | ![]() |
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PDB format | ![]() | 27.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 438 KB | Display | ![]() |
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Full document | ![]() | 448.4 KB | Display | |
Data in XML | ![]() | 9.9 KB | Display | |
Data in CIF | ![]() | 13.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Atom site foot note | 1: THE FOLLOWING RESIDUES MODELLED WITH 2 SIDE CHAIN CONFORMATIONS: GLU A 7, ARG A 17, ARG A 39, GLU A 49, ASP B 3, ARG B 17, ARG B 39, ARG B 42, GLU B 49. | ||||||||
Noncrystallographic symmetry (NCS) | NCS oper: (Code: given Matrix: (0.785512, -0.594349, -0.172394), Vector: Details | THE TRANSFORMATION PRESENTED ON *MTRIX* RECORDS BELOW WILL GENERATE APPROXIMATE COORDINATES FOR CHAIN B WHEN APPLIED TO CHAIN A. | |
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Components
#1: Protein | Mass: 6491.490 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() #2: Chemical | ChemComp-PO4 / | #3: Water | ChemComp-HOH / | Compound details | THERE IS A UNIQUE SALT-BRIDGE BETWEEN THE N AND C TERMINALS OF MOLECULES WITH RESIDUE NUMBERS 1 - ...THERE IS A UNIQUE SALT-BRIDGE BETWEEN THE N AND C TERMINALS OF MOLECULES WITH RESIDUE NUMBERS 1 - 58, WHICH HAS BEEN SEEN IN SOLUTION (NMR) BUT NEVER CRYSTALLOG | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.35 Å3/Da / Density % sol: 47.57 % |
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Crystal grow | *PLUS pH: 10 / Method: vapor diffusion, hanging drop |
Components of the solutions | *PLUS Conc.: 0.7 M / Chemical formula: NaKPO4 |
-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 1.6 Å / Lowest resolution: 8 Å / Num. obs: 16638 / Rmerge(I) obs: 0.131 |
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Processing
Software | Name: PROLSQ / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Resolution: 1.6→8 Å / σ(I): 1 /
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Refinement step | Cycle: LAST / Resolution: 1.6→8 Å
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Refine LS restraints |
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Refinement | *PLUS Highest resolution: 1.6 Å / Lowest resolution: 8 Å / Num. reflection obs: 15473 / σ(I): 1 / Rfactor obs: 0.179 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |