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- PDB-2mjj: A tetrahelical DNA fold adopted by alternating GGG and GCG tracts -
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Open data
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Basic information
Entry | Database: PDB / ID: 2mjj | ||||||||||||||||||||
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Title | A tetrahelical DNA fold adopted by alternating GGG and GCG tracts | ||||||||||||||||||||
![]() | 5'-D(*![]() DNA / tandem repeat | Function / homology | DNA / DNA (> 10) | ![]() Method | SOLUTION NMR / simulated annealing | Model details | lowest energy, model4 | ![]() Kocman, V. / Plavec, J. | ![]() ![]() Title: A tetrahelical DNA fold adopted by tandem repeats of alternating GGG and GCG tracts. Authors: Kocman, V. / Plavec, J. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 194.8 KB | Display | ![]() |
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PDB format | ![]() | 158.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
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-Validation report
Summary document | ![]() | 471.1 KB | Display | ![]() |
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Full document | ![]() | 636.7 KB | Display | |
Data in XML | ![]() | 19.8 KB | Display | |
Data in CIF | ![]() | 27.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: DNA chain | Mass: 4765.084 Da / Num. of mol.: 2 / Source method: obtained synthetically / Details: d(GGGAGCG)n |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
Details | Contents: 2.8 mM DNA, 1 mM partial residue specific 15N DNA, 1 mM residue specific 2H DNA, 90% H2O/10% D2O Solvent system: 90% H2O/10% D2O | ||||||||||||||||
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Sample |
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Sample conditions | Ionic strength: 100 / pH: 6 / Pressure: ambient / Temperature: 273 K |
-NMR measurement
NMR spectrometer |
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Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | ||||||||||||
NMR constraints | NOE constraints total: 324 / NOE intraresidue total count: 120 / NOE long range total count: 16 / NOE sequential total count: 132 | ||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 10 / Maximum upper distance constraint violation: 0.3 Å | ||||||||||||
NMR ensemble rms | Distance rms dev: 1.121 Å |