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Open data
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Basic information
Entry | Database: PDB / ID: 2lxy | ||||||
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Title | NMR structure of 2-MERCAPTOPHENOL-ALPHA3C | ||||||
![]() | 2-mercaptophenol-alpha3C | ||||||
![]() | DE NOVO PROTEIN / three-helix bundle / redox protein / phenol oxidation-reduction / proton-coupled electron transfer | ||||||
Function / homology | Designed single chain three-helix bundle / Substrate Binding Domain Of Dnak; Chain:A; Domain 2 / Up-down Bundle / Mainly Alpha / 2-MERCAPTOPHENOL![]() | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Model details | lowest energy, model1 | ||||||
![]() | Tommos, C. / Valentine, K.G. / Martinez-Rivera, M.C. / Liang, L. / Moorman, V.R. | ||||||
![]() | ![]() Title: Reversible phenol oxidation and reduction in the structurally well-defined 2-Mercaptophenol-alpha(3)C protein. Authors: Tommos, C. / Valentine, K.G. / Martinez-Rivera, M.C. / Liang, L. / Moorman, V.R. #1: Journal: Proc.Natl.Acad.Sci.USA / Year: 2012 Title: Reversible voltammograms and a Pourbaix diagram for a protein tyrosine radical. Authors: Berry, B.W. / Martinez-Rivera, M.C. / Tommos, C. #2: Journal: J.Am.Chem.Soc. / Year: 2011 Title: Electrochemical and structural properties of a protein system designed to generate tyrosine Pourbaix diagrams. Authors: Martinez-Rivera, M.C. / Berry, B.W. / Valentine, K.G. / Westerlund, K. / Hay, S. / Tommos, C. #3: Journal: Biochemistry / Year: 2005 Title: Moving a phenol hydroxyl group from the surface to the interior of a protein: effects on the phenol potential and pK(A). Authors: Hay, S. / Westerlund, K. / Tommos, C. #4: ![]() Title: Structure of a de novo designed protein model of radical enzymes. Authors: Dai, Q.H. / Tommos, C. / Fuentes, E.J. / Blomberg, M.R. / Dutton, P.L. / Wand, A.J. #5: Journal: Biochemistry / Year: 1999 Title: De novo proteins as models of radical enzymes. Authors: Tommos, C. / Skalicky, J.J. / Pilloud, D.L. / Wand, A.J. / Dutton, P.L. #6: Journal: Biochemistry / Year: 1999 Title: De novo proteins as models of radical enzymes Authors: Tommos, C. / Skalicky, J.J. / Pilloud, D.L. / Wand, A. / Dutton, P. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 672.3 KB | Display | ![]() |
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PDB format | ![]() | 569.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 450.7 KB | Display | ![]() |
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Full document | ![]() | 660.7 KB | Display | |
Data in XML | ![]() | 40.5 KB | Display | |
Data in CIF | ![]() | 64.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Similar structure data | |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: Protein | Mass: 7479.832 Da / Num. of mol.: 1 / Source method: obtained synthetically / Production host: ![]() ![]() |
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#2: Chemical | ChemComp-HTS / |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
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Sample |
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Sample conditions | Ionic strength: 60 / pH: 5.5 / Pressure: ambient / Temperature: 303 K |
-NMR measurement
NMR spectrometer | Type: Varian INOVA / Manufacturer: Varian / Model: INOVA / Field strength: 750 MHz |
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Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | ||||||||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 1000 / Conformers submitted total number: 32 |