[English] 日本語
![](img/lk-miru.gif)
- PDB-2jxm: Ensemble of twenty structures of the Prochlorothrix hollandica pl... -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 2jxm | ||||||
---|---|---|---|---|---|---|---|
Title | Ensemble of twenty structures of the Prochlorothrix hollandica plastocyanin- cytochrome f complex | ||||||
![]() |
| ||||||
![]() | ![]() ![]() | ||||||
Function / homology | ![]() : / electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity / plasma membrane-derived thylakoid membrane / ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() | ||||||
![]() | Hulsker, R. / Baranova, M. / Bullerjahn, G. / Ubbink, M. | ||||||
![]() | ![]() Title: Dynamics in the transient complex of plastocyanin-cytochrome f from Prochlorothrix hollandica. Authors: Hulsker, R. / Baranova, M.V. / Bullerjahn, G.S. / Ubbink, M. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 2 MB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 1.7 MB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
---|
-Related structure data
Related structure data | |
---|---|
Similar structure data |
-
Links
-
Assembly
Deposited unit | ![]()
| |||||||||
---|---|---|---|---|---|---|---|---|---|---|
1 |
| |||||||||
NMR ensembles |
|
-
Components
#1: Protein | ![]() Mass: 10148.560 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
---|---|
#2: Protein | ![]() Mass: 26611.578 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
#3: Chemical | ChemComp-CU / ![]() |
#4: Chemical | ChemComp-HEC / ![]() |
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|---|
NMR experiment | Type![]() ![]() |
-
Sample preparation
Details | Contents: 85 uM [U-99% 15N] plastocyanin, 50 uM cytochrome f, 95% H2O/5% D2O Solvent system: 95% H2O/5% D2O | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample |
| ||||||||||||
Sample conditions | Ionic strength: 10 / pH: 6.0 / Pressure: ambient / Temperature: 300 K |
-NMR measurement
NMR spectrometer | Type: Bruker DMX / Manufacturer: Bruker / Model![]() |
---|
-
Processing
NMR software |
| |||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method: Rigid Body docking, Energy minimisation / Software ordinal: 1 Details: Rigid Body docking based on PDB entry 1B3I and a homology model of cytochrome f. Docking energies based on pseudocontact and chemical shift perturbation restraints. Energy minimisation of side-chains. | |||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | |||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 1000 / Conformers submitted total number: 20 |