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Open data
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Basic information
Entry | Database: PDB / ID: 2jd3 | ||||||
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Title | ParR from plasmid pB171 | ||||||
![]() | STBB PROTEIN | ||||||
![]() | DNA BINDING PROTEIN / PLASMID SEGREGATION / ACTIN-LIKE FILAMENTS / RHH2 / PARM / PLASMID / DNA BINDING | ||||||
Function / homology | Four Helix Bundle (Hemerythrin (Met), subunit A) - #20 / Four Helix Bundle (Hemerythrin (Met), subunit A) / Helix non-globular / Special / : ![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Moller-Jensen, J. / Lowe, J. | ||||||
![]() | ![]() Title: Structural Analysis of the Parr/Parc Plasmid Partition Complex. Authors: Moller-Jensen, J. / Ringgaard, S. / Mercogliano, C.P. / Gerdes, K. / Lowe, J. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 47 KB | Display | ![]() |
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PDB format | ![]() | 34 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 437.8 KB | Display | ![]() |
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Full document | ![]() | 443.5 KB | Display | |
Data in XML | ![]() | 9.5 KB | Display | |
Data in CIF | ![]() | 12 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 14668.773 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.91 Å3/Da / Density % sol: 58 % / Description: NONE |
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC CCD / Detector: CCD / Date: Sep 1, 2005 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.931 Å / Relative weight: 1 |
Reflection | Resolution: 2.8→50 Å / Num. obs: 9015 / % possible obs: 99.9 % / Observed criterion σ(I): 0 / Redundancy: 11.6 % / Biso Wilson estimate: 80.11 Å2 / Rmerge(I) obs: 0.08 / Net I/σ(I): 23.3 |
Reflection shell | Resolution: 2.8→2.95 Å / Redundancy: 12 % / Rmerge(I) obs: 0.46 / Mean I/σ(I) obs: 5.3 / % possible all: 99.9 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: NONE Resolution: 2.8→50 Å / Data cutoff high absF: 10000 / Cross valid method: THROUGHOUT / σ(F): 0 / Stereochemistry target values: ML
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Solvent computation | Bsol: 31.7018 Å2 / ksol: 0.321467 e/Å3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 54.9 Å2
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Refinement step | Cycle: LAST / Resolution: 2.8→50 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.8→2.91 Å / Total num. of bins used: 9
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Xplor file |
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