Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelength
Wavelength: 0.97941 Å / Relative weight: 1
Reflection
Redundancy: 5.7 % / Av σ(I) over netI: 6.9 / Number: 67242 / Rmerge(I) obs: 0.237 / Χ2: 1.44 / D res high: 1.63 Å / D res low: 30 Å / Num. obs: 11696 / % possible obs: 98.5
Diffraction reflection shell
Highest resolution (Å)
Lowest resolution (Å)
% possible obs (%)
ID
Rmerge(I) obs
Chi squared
Redundancy
4.42
30
100
1
0.172
1.816
6.2
3.51
4.42
99.8
1
0.139
1.383
6.5
3.07
3.51
100
1
0.157
1.622
6.5
2.79
3.07
99.2
1
0.19
1.55
6.5
2.59
2.79
99.3
1
0.239
1.928
6.5
2.43
2.59
99.2
1
0.265
1.739
6.5
2.31
2.43
99.3
1
0.288
1.616
6.4
2.21
2.31
99.7
1
0.349
1.639
6.3
2.13
2.21
98.5
1
0.383
1.543
6.3
2.05
2.13
98.4
1
0.428
1.331
6.1
1.99
2.05
99.7
1
0.5
1.459
6
1.93
1.99
97.3
1
0.574
1.376
5.9
1.88
1.93
99.8
1
0.673
1.201
5.6
1.84
1.88
97.3
1
0.713
1.156
5.6
1.79
1.84
99
1
0.825
1.167
5.3
1.76
1.79
95.5
1
0.802
1.109
5
1.72
1.76
98.7
1
1.061
4.8
1.69
1.72
95.5
1
1.13
4.6
1.66
1.69
97.1
1
1.156
4.2
1.63
1.66
95.4
1
0.988
3.8
Reflection
Resolution: 1.63→30 Å / Num. obs: 11696 / % possible obs: 98.5 % / Redundancy: 5.7 % / Rmerge(I) obs: 0.237 / Χ2: 1.442 / Net I/σ(I): 6.9
Reflection shell
Resolution (Å)
Redundancy (%)
Num. unique all
Χ2
Diffraction-ID
% possible all
Rmerge(I) obs
1.63-1.66
3.8
544
0.988
1
95.4
1.66-1.69
4.2
578
1.156
1
97.1
1.69-1.72
4.6
546
1.13
1
95.5
1.72-1.76
4.8
590
1.061
1
98.7
1.76-1.79
5
547
1.109
1
95.5
0.802
1.79-1.84
5.3
580
1.167
1
99
0.825
1.84-1.88
5.6
610
1.156
1
97.3
0.713
1.88-1.93
5.6
550
1.201
1
99.8
0.673
1.93-1.99
5.9
582
1.376
1
97.3
0.574
1.99-2.05
6
602
1.459
1
99.7
0.5
2.05-2.13
6.1
570
1.331
1
98.4
0.428
2.13-2.21
6.3
589
1.543
1
98.5
0.383
2.21-2.31
6.3
580
1.639
1
99.7
0.349
2.31-2.43
6.4
597
1.616
1
99.3
0.288
2.43-2.59
6.5
588
1.739
1
99.2
0.265
2.59-2.79
6.5
596
1.928
1
99.3
0.239
2.79-3.07
6.5
591
1.55
1
99.2
0.19
3.07-3.51
6.5
594
1.622
1
100
0.157
3.51-4.42
6.5
630
1.383
1
99.8
0.139
4.42-30
6.2
632
1.816
1
100
0.172
-
Phasing
Phasing MR
Rfactor: 48.7 / Cor.coef. Fo:Fc: 38.62
Highest resolution
Lowest resolution
Rotation
4 Å
15 Å
Translation
4 Å
15 Å
-
Processing
Software
Name
Version
Classification
NB
DENZO
datareduction
SCALEPACK
datascaling
COMO
1.2
phasing
CNS
refinement
PDB_EXTRACT
2
dataextraction
ADSC
QUANTUM
datacollection
Refinement
Method to determine structure: MOLECULAR REPLACEMENT / Resolution: 1.63→30 Å / FOM work R set: 0.904 / σ(F): 1360
Rfactor
Num. reflection
% reflection
Rfree
0.201
506
4.2 %
Rwork
0.198
-
-
obs
-
9805
82.3 %
Solvent computation
Bsol: 36.819 Å2
Displacement parameters
Biso mean: 22.007 Å2
Baniso -1
Baniso -2
Baniso -3
1-
3.321 Å2
0 Å2
-2.39 Å2
2-
-
-3.601 Å2
0 Å2
3-
-
-
0.28 Å2
Refinement step
Cycle: LAST / Resolution: 1.63→30 Å
Protein
Nucleic acid
Ligand
Solvent
Total
Num. atoms
727
0
0
96
823
Refine LS restraints
Refine-ID
Type
Dev ideal
X-RAY DIFFRACTION
c_bond_d
0.005
X-RAY DIFFRACTION
c_angle_deg
1.013
LS refinement shell
Refine-ID: X-RAY DIFFRACTION / Total num. of bins used: 10
Resolution (Å)
Rfactor Rfree
Num. reflection Rfree
Rfactor Rwork
Num. reflection Rwork
Num. reflection obs
1.63-1.69
0.34
23
0.247
580
603
1.69-1.76
0.199
39
0.247
676
715
1.76-1.84
0.222
32
0.22
774
806
1.84-1.93
0.203
48
0.201
873
921
1.93-2.05
0.218
49
0.202
978
1027
2.05-2.21
0.196
31
0.19
1045
1076
2.21-2.43
0.238
73
0.193
1025
1098
2.43-2.79
0.182
64
0.189
1077
1141
2.79-3.51
0.193
64
0.193
1100
1164
3.51-40
0.188
83
0.194
1171
1254
Xplor file
Refine-ID
Serial no
Param file
X-RAY DIFFRACTION
1
protein_rep.param
X-RAY DIFFRACTION
2
water_rep.param
X-RAY DIFFRACTION
3
ion.param
+
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