Entry Database : PDB / ID : 2gwf Structure visualization Downloads & linksTitle Structure of a USP8-NRDP1 complex ComponentsRING finger protein 41 Ubiquitin carboxyl-terminal hydrolase 8 DetailsKeywords HYDROLASE/LIGASE / PROTEIN-PROTEIN COMPLEX / E3 LIGASE / PROTEIN UBIQUITINATION / HYDROLASE / PROTEASE / UBL CONJUGATION PATHWAY / Structural Genomics / Structural Genomics Consortium / SGC / HYDROLASE-LIGASE COMPLEXFunction / homology Function and homology informationFunction Domain/homology Component
regulation of lymphocyte differentiation / interleukin-3 receptor binding / erythropoietin receptor binding / regulation of myeloid cell differentiation / endoplasmic reticulum tubular network / regulation of protein catabolic process at postsynapse, modulating synaptic transmission / negative regulation of lysosomal protein catabolic process / endosome organization / protein K48-linked deubiquitination / protein K63-linked deubiquitination ... regulation of lymphocyte differentiation / interleukin-3 receptor binding / erythropoietin receptor binding / regulation of myeloid cell differentiation / endoplasmic reticulum tubular network / regulation of protein catabolic process at postsynapse, modulating synaptic transmission / negative regulation of lysosomal protein catabolic process / endosome organization / protein K48-linked deubiquitination / protein K63-linked deubiquitination / negative regulation of mitophagy / K48-linked deubiquitinase activity / regulation of reactive oxygen species metabolic process / K63-linked deubiquitinase activity / regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction / positive regulation of amyloid fibril formation / regulation of MAPK cascade / mitotic cytokinesis / protein deubiquitination / proteasomal protein catabolic process / protein autoubiquitination / extrinsic apoptotic signaling pathway / Regulation of FZD by ubiquitination / Downregulation of ERBB2:ERBB3 signaling / cellular response to dexamethasone stimulus / cellular response to nerve growth factor stimulus / negative regulation of cell migration / RING-type E3 ubiquitin transferase / regulation of protein stability / Negative regulation of MET activity / receptor tyrosine kinase binding / autophagy / small GTPase binding / SH3 domain binding / protein polyubiquitination / ubiquitin-protein transferase activity / positive regulation of protein catabolic process / positive regulation of reactive oxygen species metabolic process / ubiquitin protein ligase activity / positive regulation of canonical Wnt signaling pathway / Antigen processing: Ubiquitination & Proteasome degradation / regulation of protein localization / midbody / ubiquitinyl hydrolase 1 / Ras protein signal transduction / cysteine-type deubiquitinase activity / dendritic spine / postsynaptic density / early endosome / endosome membrane / Ub-specific processing proteases / protein ubiquitination / cadherin binding / negative regulation of cell population proliferation / protein domain specific binding / cysteine-type endopeptidase activity / glutamatergic synapse / perinuclear region of cytoplasm / proteolysis / zinc ion binding / identical protein binding / nucleus / plasma membrane / cytosol / cytoplasm Similarity search - Function E3 ubiquitin-protein ligase NRDP1 / NRDP1, C-terminal / USP8 interacting / : / USP8 WW domain / Zinc finger, SIAH-type / Zinc finger SIAH-type profile. / USP8 dimerisation domain / USP8 dimerisation domain / Rhodanese-like domain ... E3 ubiquitin-protein ligase NRDP1 / NRDP1, C-terminal / USP8 interacting / : / USP8 WW domain / Zinc finger, SIAH-type / Zinc finger SIAH-type profile. / USP8 dimerisation domain / USP8 dimerisation domain / Rhodanese-like domain / Oxidized Rhodanese; domain 1 / Zinc finger, C3HC4 type (RING finger) / : / Rhodanese-like domain / Rhodanese domain profile. / Rhodanese-like domain superfamily / Rhodanese-like domain / Ubiquitin specific protease (USP) domain signature 2. / Ubiquitin specific protease (USP) domain signature 1. / Ubiquitin specific protease, conserved site / Peptidase C19, ubiquitin carboxyl-terminal hydrolase / Ubiquitin carboxyl-terminal hydrolase / Ubiquitin specific protease domain / Ubiquitin specific protease (USP) domain profile. / Zinc finger, RING-type, conserved site / Zinc finger RING-type signature. / Ring finger / Papain-like cysteine peptidase superfamily / Zinc finger RING-type profile. / Zinc finger, RING-type / Zinc finger, RING/FYVE/PHD-type / 3-Layer(aba) Sandwich / Alpha Beta Similarity search - Domain/homologyBiological species Homo sapiens (human)Method X-RAY DIFFRACTION / SYNCHROTRON / SAD / Resolution : 2.3 Å DetailsAuthors Walker, J.R. / Avvakumov, G.V. / Xue, S. / Newman, E.M. / Butler-Cole, C. / Finerty Jr., P.J. / Weigelt, J. / Sundstrom, M. / Arrowsmith, C.H. / Edwards, A.M. ...Walker, J.R. / Avvakumov, G.V. / Xue, S. / Newman, E.M. / Butler-Cole, C. / Finerty Jr., P.J. / Weigelt, J. / Sundstrom, M. / Arrowsmith, C.H. / Edwards, A.M. / Bochkarev, A. / Dhe-Paganon, S. / Structural Genomics Consortium (SGC) CitationJournal : J.Biol.Chem. / Year : 2006Title : Amino-terminal Dimerization, NRDP1-Rhodanese Interaction, and Inhibited Catalytic Domain Conformation of the Ubiquitin-specific Protease 8 (USP8).Authors : Avvakumov, G.V. / Walker, J.R. / Xue, S. / Finerty Jr., P.J. / Mackenzie, F. / Newman, E.M. / Dhe-Paganon, S. History Deposition May 4, 2006 Deposition site : RCSB / Processing site : RCSBRevision 1.0 Jun 6, 2006 Provider : repository / Type : Initial releaseRevision 1.1 May 1, 2008 Group : Version format complianceRevision 1.2 Jul 13, 2011 Group : Advisory / Version format complianceRevision 1.3 Feb 14, 2024 Group : Data collection / Database referencesCategory : chem_comp_atom / chem_comp_bond ... chem_comp_atom / chem_comp_bond / database_2 / struct_ref_seq_dif Item : _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_ref_seq_dif.details
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