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- PDB-2cdh: ARCHITECTURE OF THE THERMOMYCES LANUGINOSUS FUNGAL FATTY ACID SYN... -
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Open data
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Basic information
Entry | Database: PDB / ID: 2cdh | ||||||
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Title | ARCHITECTURE OF THE THERMOMYCES LANUGINOSUS FUNGAL FATTY ACID SYNTHASE AT 5 ANGSTROM RESOLUTION. | ||||||
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![]() | TRANSFERASE / FATTY ACID SYNTHESIS / MULTIFUNCTIONAL ENZYME / FUNGAL FATTY ACID SYNTHASE | ||||||
Function / homology | ![]() monounsaturated fatty acid biosynthetic process / beta-ketoacyl-[acyl-carrier-protein] synthase I / 3-oxoacyl-[acyl-carrier-protein] reductase / 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity / 3-oxoacyl-[acyl-carrier-protein] synthase activity / chloroplast / fatty acid biosynthetic process / NAD binding / cytosol Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
Model type details | CA ATOMS ONLY, CHAIN 0, 1, 2, 3, Y, Z, 4, 5, 6, 7, 8, 9, A, B, C, D, E, F, G, H, I, J, K, L, M, N, ...CA ATOMS ONLY, CHAIN 0, 1, 2, 3, Y, Z, 4, 5, 6, 7, 8, 9, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X | ||||||
![]() | Jenni, S. / Leibundgut, M. / Maier, T. / Ban, N. | ||||||
![]() | ![]() Title: Architecture of a Fungal Fatty Acid Synthase at 5 A Resolution. Authors: Jenni, S. / Leibundgut, M. / Maier, T. / Ban, N. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 293.9 KB | Display | ![]() |
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PDB format | ![]() | 218 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 347.3 KB | Display | ![]() |
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Full document | ![]() | 349.3 KB | Display | |
Data in XML | ![]() | 1.6 KB | Display | |
Data in CIF | ![]() | 89.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 1dd8S ![]() 1edoS ![]() 1goxS ![]() 1nm2S ![]() 1s9cS S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 24088.078 Da / Num. of mol.: 6 / Source method: isolated from a natural source / Details: DSMZ10635 / Source: (natural) ![]() ![]() #2: Protein | Mass: 31119.555 Da / Num. of mol.: 12 / Source method: isolated from a natural source / Details: DSMZ10635 / Source: (natural) ![]() ![]() #3: Protein | Mass: 42684.254 Da / Num. of mol.: 6 / Source method: isolated from a natural source / Details: DSMZ10635 / Source: (natural) ![]() ![]() #4: Protein | Mass: 25359.418 Da / Num. of mol.: 6 / Source method: isolated from a natural source / Details: DSMZ10635 / Source: (natural) ![]() ![]() #5: Protein | Mass: 27619.830 Da / Num. of mol.: 6 / Source method: isolated from a natural source / Details: DSMZ10635 / Source: (natural) ![]() ![]() Sequence details | THE CA ATOMS OF PDB ENTRIES 1S9C, 1EDO, 1GOX AND 1NM2 WERE FITTED AS RIGID BODIES INTO ELECTRON DENSITY. | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density % sol: 66 % Description: CA ATOMS OF PDB ENTRIES 1S9C, 1DD8, 1EDO, 1GOX, 1NM2 WERE FITTED AS RIGID BODIES INTO THE ELECTRON DENSITY |
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARRESEARCH / Detector: CCD |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 4.2→500 Å / Num. obs: 261067 / % possible obs: 98 % / Redundancy: 3.5 % / Rmerge(I) obs: 0.15 / Net I/σ(I): 6.6 |
Reflection shell | Resolution: 4.2→4.5 Å / Rmerge(I) obs: 0.61 / Mean I/σ(I) obs: 2.2 / % possible all: 97.5 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRIES 1S9C, 1DD8, 1EDO, 1GOX AND 1NM2 Resolution: 4.2→500 Å / Num. reflection obs: 261067 | ||||||||||||
Refinement step | Cycle: LAST / Resolution: 4.2→500 Å
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