[English] 日本語
![](img/lk-miru.gif)
- PDB-1gox: REFINED STRUCTURE OF SPINACH GLYCOLATE OXIDASE AT 2 ANGSTROMS RES... -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 1gox | ||||||
---|---|---|---|---|---|---|---|
Title | REFINED STRUCTURE OF SPINACH GLYCOLATE OXIDASE AT 2 ANGSTROMS RESOLUTION | ||||||
![]() | (S)-2-HYDROXY-ACID OXIDASE, PEROXISOMAL | ||||||
![]() | OXIDOREDUCTASE (OXYGEN(A)) | ||||||
Function / homology | ![]() oxidative photosynthetic carbon pathway / (S)-2-hydroxy-acid oxidase / (S)-2-hydroxy-acid oxidase activity / : / fatty acid alpha-oxidation / response to other organism / L-lactate dehydrogenase activity / peroxisome / FMN binding / plasma membrane Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() | ||||||
![]() | Lindqvist, Y. | ||||||
![]() | ![]() Title: Refined structure of spinach glycolate oxidase at 2 A resolution. Authors: Lindqvist, Y. #1: ![]() Title: The Active Site of Spinach Glycolate Oxidase Authors: Lindqvist, Y. / Branden, C.-I. #2: ![]() Title: Primary Structure of Glycolate Oxidase from Spinach Authors: Cederlund, E. / Lindqvist, Y. / Soderlund, G. / Branden, C.-I. / Jornvall, H. #3: ![]() Title: Structure of Glycolate Oxidase from Spinach Authors: Lindqvist, Y. / Branden, C.-I. #4: ![]() Title: Structure of Glycolate Oxidase from Spinach at a Resolution of 5.5 Angstroms Authors: Lindqvist, Y. / Branden, C.-I. #5: ![]() Title: Preliminary Crystallographic Data for Glycolate Oxidase from Spinach Authors: Lindqvist, Y. / Branden, C.-I. | ||||||
History |
| ||||||
Remark 700 | SHEET THE SHEET PRESENTED AS *BAR* ON SHEET RECORDS BELOW IS ACTUALLY AN EIGHT-STRANDED BETA-BARREL. ...SHEET THE SHEET PRESENTED AS *BAR* ON SHEET RECORDS BELOW IS ACTUALLY AN EIGHT-STRANDED BETA-BARREL. THIS IS REPRESENTED BY A NINE-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. |
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 87.1 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 65.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 463.9 KB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 475.2 KB | Display | |
Data in XML | ![]() | 10.5 KB | Display | |
Data in CIF | ![]() | 16.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
---|
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 | ![]()
| ||||||||
2 | ![]()
| x 8||||||||
Unit cell |
| ||||||||
Components on special symmetry positions |
|
-
Components
#1: Protein | ( Mass: 40359.547 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() |
---|---|
#2: Chemical | ChemComp-FMN / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 4.59 Å3/Da / Density % sol: 73.19 % | ||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Crystal grow | *PLUS pH: 8.3 / Method: microdialysisDetails: referred to 'Lindqvist, Y.', (1979) J.Biol.Chem., 254, 7403-7404 | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
|
-Data collection
Radiation | Scattering type: x-ray |
---|---|
Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 2 Å / % possible obs: 70 % |
-
Processing
Software | Name: PROLSQ / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Rfactor obs: 0.189 / Highest resolution: 2 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 2 Å
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Software | *PLUS Name: PROLSQ / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Lowest resolution: 5.5 Å / Num. reflection all: 32888 / Rfactor all: 0.189 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS Biso mean: 27.1 Å2 |