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- PDB-1rnm: RIBONUCLEASE A COMPLEX WITH CYTIDYLIC ACID (5'CMP) CRYSTALLIZED F... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1rnm | ||||||
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Title | RIBONUCLEASE A COMPLEX WITH CYTIDYLIC ACID (5'CMP) CRYSTALLIZED FROM 80% AMMONIUM SULPHATE | ||||||
![]() | RIBONUCLEASE A | ||||||
![]() | COMPLEX (HYDROLASE/CYTIDYLIC ACID) / COMPLEX (HYDROLASE-CYTIDYLIC ACID) / COMPLEX (HYDROLASE-CYTIDYLIC ACID) complex | ||||||
Function / homology | ![]() pancreatic ribonuclease / ribonuclease A activity / RNA nuclease activity / nucleic acid binding / lyase activity / defense response to Gram-positive bacterium / extracellular region Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() | ||||||
![]() | Fedorov, A.A. / Almo, S.C. | ||||||
![]() | ![]() Title: Structure of the Crystalline Complex of Bovine Pancreatic Ribonuclease A and Cytidylic Acid Authors: Fedorov, A.A. / Josef-Mccarthy, D. / Graf, I. / Anguelova, D. / Fedorov, E.V. / Almo, S.C. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 34.4 KB | Display | ![]() |
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PDB format | ![]() | 26.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 456.5 KB | Display | ![]() |
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Full document | ![]() | 459.2 KB | Display | |
Data in XML | ![]() | 4.8 KB | Display | |
Data in CIF | ![]() | 7.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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2 | ![]()
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Unit cell |
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Atom site foot note | 1: CIS PROLINE - PRO E 93 / 2: CIS PROLINE - PRO E 114 | ||||||||
Components on special symmetry positions |
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Components
#1: Protein | Mass: 13708.326 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() ![]() | ||||
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#2: Chemical | #3: Chemical | ChemComp-C5P / | #4: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.96 Å3/Da / Density % sol: 58.51 % |
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Crystal grow | pH: 5.5 / Details: pH 5.5 |
-Data collection
Diffraction | Mean temperature: 290 K |
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Diffraction source | Source: ![]() |
Detector | Type: SIEMENS / Detector: AREA DETECTOR / Date: 1992 |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 2→9.6 Å / Num. obs: 8914 / % possible obs: 78.3 % / Redundancy: 2.58 % / Rmerge(I) obs: 0.044 / Net I/σ(I): 41.2 |
Reflection shell | Resolution: 2→2.09 Å / Redundancy: 1.68 % / Rmerge(I) obs: 0.127 / Mean I/σ(I) obs: 9.6 / % possible all: 51.2 |
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Processing
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Refinement | Resolution: 2→8 Å / σ(F): 2 /
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Refinement step | Cycle: LAST / Resolution: 2→8 Å
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Refine LS restraints |
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