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Yorodumi- PDB-2bfg: crystal structure of beta-xylosidase (fam GH39) in complex with d... -
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Open data
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Basic information
| Entry | Database: PDB / ID: 2bfg | |||||||||
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| Title | crystal structure of beta-xylosidase (fam GH39) in complex with dinitrophenyl-beta-xyloside and covalently bound xyloside | |||||||||
Components | BETA-XYLOSIDASE | |||||||||
Keywords | HYDROLASE / FAMILY GH39 / THERMOPHILIC ENZYME | |||||||||
| Function / homology | Function and homology informationxylan 1,4-beta-xylosidase / xylan 1,4-beta-xylosidase activity / xylan catabolic process Similarity search - Function | |||||||||
| Biological species | ![]() BACILLUS STEAROTHERMOPHILUS (bacteria) | |||||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.4 Å | |||||||||
Authors | Czjzek, M. / Bravman, T. / Henrissat, B. / Shoham, Y. | |||||||||
Citation | Journal: J.Mol.Biol. / Year: 2005Title: Enzyme-Substrate Complex Structures of a Gh39 Beta-Xylosidase from Geobacillus Stearothermophilus. Authors: Czjzek, M. / David, A.B. / Bravman, T. / Shoham, G. / Henrissat, B. / Shoham, Y. #1: Journal: Acta Crystallogr.,Sect.D / Year: 2004 Title: Crystallization and Preliminary X-Ray Analysis of Family 39 Beta-D-Xylosidase from Geobacillus Stearothermophilus T-6 Authors: Czjzek, M. / Bravman, T. / Henrissat, B. / Shoham, Y. | |||||||||
| History |
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| Remark 700 | SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AB, BC, CB" IN EACH CHAIN ON SHEET ... SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AB, BC, CB" IN EACH CHAIN ON SHEET RECORDS BELOW ARE ACTUALLY 8-STRANDED BARRELS REPRESENTED BY 9-STRANDED SHEETS IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. THE SHEETS PRESENTED AS "DB, EC, FB, GB, HB" IN EACH CHAIN ON SHEET RECORDS BELOW ARE ACTUALLY 7-STRANDED BARRELS THIS IS REPRESENTED BY 8-STRANDED SHEETS IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. |
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 2bfg.cif.gz | 814.2 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb2bfg.ent.gz | 677.1 KB | Display | PDB format |
| PDBx/mmJSON format | 2bfg.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 2bfg_validation.pdf.gz | 590 KB | Display | wwPDB validaton report |
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| Full document | 2bfg_full_validation.pdf.gz | 705.8 KB | Display | |
| Data in XML | 2bfg_validation.xml.gz | 182.2 KB | Display | |
| Data in CIF | 2bfg_validation.cif.gz | 238.4 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/bf/2bfg ftp://data.pdbj.org/pub/pdb/validation_reports/bf/2bfg | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 2bs9C ![]() 1uhvS C: citing same article ( S: Starting model for refinement |
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| Similar structure data |
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Assembly
| Deposited unit | ![]()
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| Unit cell |
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Ens-ID: 1
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About Yorodumi




BACILLUS STEAROTHERMOPHILUS (bacteria)
X-RAY DIFFRACTION
Citation










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