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- PDB-2alj: Structure of the cis confomer of the major extracytoplasmic domai... -
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Open data
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Basic information
Entry | Database: PDB / ID: 2alj | ||||||
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Title | Structure of the cis confomer of the major extracytoplasmic domain of the bacterial cell division protein divib from geobacillus stearothermophilus | ||||||
![]() | cell-division initiation protein | ||||||
![]() | CELL CYCLE / CELL-DIVISION INITIATION PROTEIN / DIVIB / FTSQ / DIVISOME | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | SOLUTION NMR / TORSION ANGLE DYNAMICS (CANDID, CYANA), SIMULATED ANNEALING (XPLOR) | ||||||
![]() | Robson, S.A. / King, G.F. | ||||||
![]() | ![]() Title: Domain architecture and structure of the bacterial cell division protein DivIB Authors: Robson, S.A. / King, G.F. #1: ![]() Title: Cloning and expression of a bacillus subtilis division initiation gene for which a homolog has not been identified in another organism Authors: Harry, E.J. / Wake, R.G. #2: ![]() Title: Nucleotide sequence and insertional inactivation of a bacillus subtilis gene that affects cell division, sporulation, and temperature sensitivity Authors: Beall, B. / Lutkenhaus, J. #3: ![]() Title: DIVIB, FTSZ and cell division in bacillus subtilis Authors: Rowland, S.L. / Katis, V.L. / Partridge, S.R. / Wake, R.G. #4: ![]() Title: Membrane-bound division proteins DivIB and DivIC of bacillus subtilis function solely through their external domains in both vegetative and sporulation division Authors: Katis, V.L. / Wake, R.G. | ||||||
History |
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Remark 650 | HELIX DETERMINATION METHOD: AUTHOR DETERMINED | ||||||
Remark 999 | SEQUENCE DIVIB FRAGMENT WAS SUBCLONED AS A TRANSLATIONAL FUSION TO THE C-TERMINUS OF SCHISTOSOMA ...SEQUENCE DIVIB FRAGMENT WAS SUBCLONED AS A TRANSLATIONAL FUSION TO THE C-TERMINUS OF SCHISTOSOMA JAPONICUM GLUTATHIONE S-TRANSFERASE. THE GENE SEQUENCE ENCODING THIS PROTEIN DOMAIN WAS CLONED USING CHROMOSOMAL DNA FROM GEOBACILLUS STEAROTHERMOPHILUS. The sequence matches that of THE CORRESPONDING DOMAIN OF the DIVIB ORTHOLOG from Geobacillus kaustophilus (SWISS-PROT ENTRY Q5L0X5_GEOKA and Genbank GI:56419655). |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 904.9 KB | Display | ![]() |
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PDB format | ![]() | 757 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 351.4 KB | Display | ![]() |
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Full document | ![]() | 529.4 KB | Display | |
Data in XML | ![]() | 51.7 KB | Display | |
Data in CIF | ![]() | 85.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 |
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NMR ensembles |
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Components
#1: Protein | Mass: 13365.084 Da / Num. of mol.: 1 / Fragment: beta domain Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Gene: DivIB / Plasmid: PSAR19 / Species (production host): Escherichia coli / Production host: ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||
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NMR experiment |
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Sample preparation
Details | Contents: 1 MM DIVIB, 150 MM NACL, 10 MM SODIUM PHOSPHATE, 10 MICROMOLAR EDTA, 10 MICROMOLAR 4-(2- AMINOETHYL)BENZENESULFONYL FLOURIDE (AEBSF), 0.02% SODIUM AZIDE, PH 6.0, 92.5% H2O, 7.5% D2O; 1 MM ...Contents: 1 MM DIVIB, 150 MM NACL, 10 MM SODIUM PHOSPHATE, 10 MICROMOLAR EDTA, 10 MICROMOLAR 4-(2- AMINOETHYL)BENZENESULFONYL FLOURIDE (AEBSF), 0.02% SODIUM AZIDE, PH 6.0, 92.5% H2O, 7.5% D2O; 1 MM DIVIB, 150 MM NACL, 10 MM SODIUM PHOSPHATE, 10 MICROMOLAR EDTA, 10 MICROMOLAR 4- (2-AMINOETHYL)BENZENESULFONYL FLOURIDE (AEBSF), 0.02% SODIUM AZIDE, PH 6.0, 100% D2O |
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Sample conditions | Ionic strength: 0.16 / pH: 6.0 / Pressure: AMBIENT / Temperature: 308 K |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M | |||||||||||||||
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Radiation wavelength | Relative weight: 1 | |||||||||||||||
NMR spectrometer |
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Processing
NMR software |
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Refinement | Method: TORSION ANGLE DYNAMICS (CANDID, CYANA), SIMULATED ANNEALING (XPLOR) Software ordinal: 1 Details: THE STRUCTURES ARE BASED ON A TOTAL OF 2544 NOE-DERIVED DISTANCE RESTRAINTS, 88 RESTRAINTS DEFINING 44 HYDROGEN BONDS, AND 197 DIHEDRAL ANGLE RESTRAINTS | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: STRUCTURES WITH LOWEST ENERGY AND NO RESTRAINT VIOLATIONS Conformers calculated total number: 60 / Conformers submitted total number: 25 |