+Open data
-Basic information
Entry | Database: PDB / ID: 269d | ||||||||||||||||||
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Title | STRUCTURAL STUDIES ON NUCLEIC ACIDS | ||||||||||||||||||
Components | DNA (5'-D(*Keywords | DNA / B-DNA / DOUBLE HELIX / MODIFIED / COMPLEXED WITH DRUG | Function / homology | Chem-HT / DNA / DNA (> 10) | Function and homology information Method | X-RAY DIFFRACTION / MIR / Resolution: 2.15 Å | Authors | Partridge, B.L. / Salisbury, S.A. | Citation | #1: Journal: Thesis, University of Cambridge / Year: 1996 Title: Structural Studies on Nucleic Acids Authors: Partridge, B.L. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 269d.cif.gz | 30.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb269d.ent.gz | 18.4 KB | Display | PDB format |
PDBx/mmJSON format | 269d.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 269d_validation.pdf.gz | 569.3 KB | Display | wwPDB validaton report |
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Full document | 269d_full_validation.pdf.gz | 597.7 KB | Display | |
Data in XML | 269d_validation.xml.gz | 9.1 KB | Display | |
Data in CIF | 269d_validation.cif.gz | 11.2 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/69/269d ftp://data.pdbj.org/pub/pdb/validation_reports/69/269d | HTTPS FTP |
-Related structure data
Related structure data | |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: DNA chain | Mass: 3677.419 Da / Num. of mol.: 2 / Source method: obtained synthetically #2: Chemical | ChemComp-MG / | #3: Chemical | ChemComp-HT / | #4: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.23 Å3/Da / Density % sol: 44.87 % | ||||||||||||
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Crystal grow | pH: 7.1 / Details: pH 7.10 | ||||||||||||
Components of the solutions |
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ROTATING ANODE / Type: RIGAKU RU200 |
Detector | Type: RIGAKU RAXIS IIC / Detector: IMAGE PLATE / Date: Jul 23, 1995 |
Radiation | Monochromator: GRAPHITE / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Resolution: 2.15→34.3 Å / Num. obs: 8997 / Rmerge(I) obs: 0.0656 |
-Processing
Software |
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Refinement | Method to determine structure: MIR / Highest resolution: 2.15 Å / σ(F): 4 Details: STANDARD R-FACTOR = 16.0% ERROR R-FACTOR = 3.4% WEIGHTED R-FACTOR = 15.6% NUMBER OF REFLECTIONS INCLUDED = 8997 AVERAGE |FO-FC| DISCREPANCY = 27.31 AVERAGE WEIGHTED |FO-FC| DISCREPANCY = -0. ...Details: STANDARD R-FACTOR = 16.0% ERROR R-FACTOR = 3.4% WEIGHTED R-FACTOR = 15.6% NUMBER OF REFLECTIONS INCLUDED = 8997 AVERAGE |FO-FC| DISCREPANCY = 27.31 AVERAGE WEIGHTED |FO-FC| DISCREPANCY = -0.04 CORRELATION COEFFICIENT =101.0% RESOLUTION BREAKDOWN "ALL" R FACTOR = 14.4%
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Refinement step | Cycle: LAST / Highest resolution: 2.15 Å
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Refine LS restraints |
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