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- PDB-1zle: Crystal structure of a RGD-containing host-selective toxin: Pyren... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1zle | |||||||||
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Title | Crystal structure of a RGD-containing host-selective toxin: Pyrenophora tritici-repentis Ptr ToxA | |||||||||
![]() | Ptr necrosis toxin | |||||||||
![]() | TOXIN / beta-sandwich / RGD-motif | |||||||||
Function / homology | Proteinaceous host-selective toxin ToxA / Proteinaceous host-selective toxin ToxA / ToxA superfamily / Proteinaceous host-selective toxin ToxA / Immunoglobulin-like / Sandwich / Mainly Beta / NICKEL (II) ION / A necrosis toxin![]() | |||||||||
Biological species | ![]() | |||||||||
Method | ![]() ![]() ![]() | |||||||||
![]() | Sarma, G.N. / Manning, V.A. / Ciuffetti, L.M. / Karplus, P.A. | |||||||||
![]() | ![]() Title: Structure of Ptr ToxA: An RGD-Containing Host-Selective Toxin from Pyrenophora tritici-repentis Authors: Sarma, G.N. / Manning, V.A. / Ciuffetti, L.M. / Karplus, P.A. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 138.4 KB | Display | ![]() |
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PDB format | ![]() | 115 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 444 KB | Display | ![]() |
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Full document | ![]() | 446.7 KB | Display | |
Data in XML | ![]() | 16.1 KB | Display | |
Data in CIF | ![]() | 21.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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2 | ![]()
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3 | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 13207.755 Da / Num. of mol.: 3 / Fragment: C-terminal domain / Source method: isolated from a natural source / Source: (natural) ![]() #2: Chemical | ChemComp-NI / #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.4 Å3/Da / Density % sol: 50 % |
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Crystal grow | Temperature: 300 K / Method: vapor diffusion, hanging drop / pH: 7 Details: 7.5% PEG 400 (v/v), 0.2 M Nickel chloride, 0.1 M Hepes-Na, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 300K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 210 / Detector: CCD / Date: Jan 15, 2004 |
Radiation | Monochromator: Double crystal, Si(111) / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 1.9→50 Å / Num. all: 31030 / Num. obs: 31030 / % possible obs: 100 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 |
Reflection shell | Resolution: 1.9→1.97 Å / % possible all: 100 |
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Processing
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Refinement | Method to determine structure: ![]()
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Refinement step | Cycle: LAST / Resolution: 1.9→50 Å
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Refine LS restraints |
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